Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13325 and BWI76_RS13330 are separated by 2 nucleotides BWI76_RS13330 and BWI76_RS13335 overlap by 4 nucleotides
BWI76_RS13325: BWI76_RS13325 - dicarboxylate transporter/tellurite-resistance protein TehA, at 2,779,061 to 2,780,059
_RS13325
BWI76_RS13330: BWI76_RS13330 - tellurite resistance methyltransferase TehB, at 2,780,062 to 2,780,658
_RS13330
BWI76_RS13335: BWI76_RS13335 - peptidase T, at 2,780,655 to 2,781,884
_RS13335
Position (kb)
2780
2781 Strain fitness (log2 ratio)
-1
0
1 at 2779.143 kb on + strand at 2779.202 kb on + strand, within BWI76_RS13325 at 2779.278 kb on + strand, within BWI76_RS13325 at 2779.286 kb on - strand, within BWI76_RS13325 at 2779.346 kb on - strand, within BWI76_RS13325 at 2779.605 kb on + strand, within BWI76_RS13325 at 2780.143 kb on - strand, within BWI76_RS13330 at 2780.843 kb on + strand, within BWI76_RS13335 at 2780.999 kb on - strand, within BWI76_RS13335 at 2781.008 kb on + strand, within BWI76_RS13335 at 2781.340 kb on - strand, within BWI76_RS13335 at 2781.475 kb on - strand, within BWI76_RS13335 at 2781.532 kb on - strand, within BWI76_RS13335 at 2781.578 kb on - strand, within BWI76_RS13335 at 2781.629 kb on - strand, within BWI76_RS13335
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,779,143 + -0.3 2,779,202 + BWI76_RS13325 0.14 +0.4 2,779,278 + BWI76_RS13325 0.22 -0.6 2,779,286 - BWI76_RS13325 0.23 +0.1 2,779,346 - BWI76_RS13325 0.29 +0.1 2,779,605 + BWI76_RS13325 0.54 +0.2 2,780,143 - BWI76_RS13330 0.14 +0.6 2,780,843 + BWI76_RS13335 0.15 -0.4 2,780,999 - BWI76_RS13335 0.28 +0.5 2,781,008 + BWI76_RS13335 0.29 -0.1 2,781,340 - BWI76_RS13335 0.56 +0.1 2,781,475 - BWI76_RS13335 0.67 +1.2 2,781,532 - BWI76_RS13335 0.71 +0.2 2,781,578 - BWI76_RS13335 0.75 +0.5 2,781,629 - BWI76_RS13335 0.79 -1.3
Or see this region's nucleotide sequence