Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11670 and BWI76_RS11675 overlap by 4 nucleotides BWI76_RS11675 and BWI76_RS11680 overlap by 4 nucleotides
BWI76_RS11670: BWI76_RS11670 - Succinylornithine transaminase (EC 2.6.1.81) (from data) , at 2,454,861 to 2,456,081
_RS11670
BWI76_RS11675: BWI76_RS11675 - arginine N-succinyltransferase, at 2,456,078 to 2,457,112
_RS11675
BWI76_RS11680: BWI76_RS11680 - succinylglutamate-semialdehyde dehydrogenase, at 2,457,109 to 2,458,587
_RS11680
Position (kb)
2456
2457
2458 Strain fitness (log2 ratio)
-1
0
1
2 at 2455.110 kb on - strand, within BWI76_RS11670 at 2455.770 kb on + strand, within BWI76_RS11670 at 2455.814 kb on + strand, within BWI76_RS11670 at 2455.817 kb on - strand, within BWI76_RS11670 at 2455.869 kb on - strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2455.910 kb on + strand, within BWI76_RS11670 at 2456.367 kb on + strand, within BWI76_RS11675 at 2456.375 kb on + strand, within BWI76_RS11675 at 2456.997 kb on - strand, within BWI76_RS11675 at 2457.686 kb on + strand, within BWI76_RS11680 at 2457.686 kb on + strand, within BWI76_RS11680 at 2457.694 kb on - strand, within BWI76_RS11680
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,455,110 - BWI76_RS11670 0.20 -1.4 2,455,770 + BWI76_RS11670 0.74 +0.9 2,455,814 + BWI76_RS11670 0.78 +0.5 2,455,817 - BWI76_RS11670 0.78 -0.5 2,455,869 - BWI76_RS11670 0.83 +0.2 2,455,910 + BWI76_RS11670 0.86 -0.0 2,455,910 + BWI76_RS11670 0.86 +1.1 2,455,910 + BWI76_RS11670 0.86 +0.1 2,455,910 + BWI76_RS11670 0.86 -1.6 2,455,910 + BWI76_RS11670 0.86 +0.8 2,456,367 + BWI76_RS11675 0.28 +0.1 2,456,375 + BWI76_RS11675 0.29 +1.8 2,456,997 - BWI76_RS11675 0.89 +1.0 2,457,686 + BWI76_RS11680 0.39 -1.2 2,457,686 + BWI76_RS11680 0.39 -0.8 2,457,694 - BWI76_RS11680 0.40 +1.1
Or see this region's nucleotide sequence