Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10730 and BWI76_RS10735 are separated by 147 nucleotides BWI76_RS10735 and BWI76_RS10740 are separated by 19 nucleotides BWI76_RS10740 and BWI76_RS10745 are separated by 374 nucleotides
BWI76_RS10730: BWI76_RS10730 - bifunctional glucose-1-phosphatase/inositol phosphatase, at 2,267,463 to 2,268,710
_RS10730
BWI76_RS10735: BWI76_RS10735 - hypothetical protein, at 2,268,858 to 2,269,085
_RS10735
BWI76_RS10740: BWI76_RS10740 - NAD(P)H:quinone oxidoreductase, at 2,269,105 to 2,269,701
_RS10740
BWI76_RS10745: BWI76_RS10745 - hypothetical protein, at 2,270,076 to 2,270,249
_RS10745
Position (kb)
2268
2269
2270 Strain fitness (log2 ratio)
-1
0
1 at 2267.861 kb on - strand, within BWI76_RS10730 at 2268.911 kb on - strand, within BWI76_RS10735 at 2269.145 kb on + strand at 2269.145 kb on + strand at 2269.610 kb on - strand, within BWI76_RS10740 at 2269.634 kb on - strand, within BWI76_RS10740 at 2269.652 kb on + strand at 2269.881 kb on - strand at 2269.988 kb on - strand at 2270.016 kb on + strand at 2270.024 kb on - strand at 2270.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,267,861 - BWI76_RS10730 0.32 -0.2 2,268,911 - BWI76_RS10735 0.23 -1.5 2,269,145 + +0.7 2,269,145 + +0.5 2,269,610 - BWI76_RS10740 0.85 +0.5 2,269,634 - BWI76_RS10740 0.89 -0.6 2,269,652 + +0.6 2,269,881 - -0.4 2,269,988 - -0.5 2,270,016 + -0.8 2,270,024 - -0.2 2,270,035 + +0.5
Or see this region's nucleotide sequence