Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08635

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08630 and BWI76_RS08635 are separated by 67 nucleotidesBWI76_RS08635 and BWI76_RS08640 are separated by 153 nucleotidesBWI76_RS08640 and BWI76_RS08645 are separated by 143 nucleotides BWI76_RS08630: BWI76_RS08630 - molybdate ABC transporter ATP-binding protein ModF, at 1,820,545 to 1,822,020 _RS08630 BWI76_RS08635: BWI76_RS08635 - molybdenum-dependent transcriptional regulator, at 1,822,088 to 1,822,876 _RS08635 BWI76_RS08640: BWI76_RS08640 - multidrug efflux pump-associated protein, AcrZ family, at 1,823,030 to 1,823,179 _RS08640 BWI76_RS08645: BWI76_RS08645 - molybdate ABC transporter substrate-binding protein, at 1,823,323 to 1,824,096 _RS08645 Position (kb) 1822 1823Strain fitness (log2 ratio) -2 -1 0 1 2at 1821.092 kb on - strand, within BWI76_RS08630at 1821.555 kb on + strand, within BWI76_RS08630at 1821.580 kb on + strand, within BWI76_RS08630at 1821.748 kb on + strand, within BWI76_RS08630at 1821.952 kb on - strandat 1822.063 kb on - strandat 1822.231 kb on + strand, within BWI76_RS08635at 1822.565 kb on + strand, within BWI76_RS08635at 1822.640 kb on + strand, within BWI76_RS08635at 1822.661 kb on + strand, within BWI76_RS08635at 1822.711 kb on - strand, within BWI76_RS08635at 1822.792 kb on - strand, within BWI76_RS08635at 1822.807 kb on + strandat 1822.959 kb on + strandat 1823.024 kb on - strandat 1823.066 kb on + strand, within BWI76_RS08640at 1823.226 kb on + strandat 1823.234 kb on - strandat 1823.336 kb on + strandat 1823.433 kb on + strand, within BWI76_RS08645at 1823.441 kb on - strand, within BWI76_RS08645

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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1,821,092 - BWI76_RS08630 0.37 -0.5
1,821,555 + BWI76_RS08630 0.68 -2.4
1,821,580 + BWI76_RS08630 0.70 +0.2
1,821,748 + BWI76_RS08630 0.82 -0.1
1,821,952 - -0.1
1,822,063 - +0.0
1,822,231 + BWI76_RS08635 0.18 -0.9
1,822,565 + BWI76_RS08635 0.60 +2.6
1,822,640 + BWI76_RS08635 0.70 -0.2
1,822,661 + BWI76_RS08635 0.73 -1.0
1,822,711 - BWI76_RS08635 0.79 -2.7
1,822,792 - BWI76_RS08635 0.89 -1.1
1,822,807 + +0.0
1,822,959 + +1.0
1,823,024 - -0.2
1,823,066 + BWI76_RS08640 0.24 -0.5
1,823,226 + +0.8
1,823,234 - +0.1
1,823,336 + +0.8
1,823,433 + BWI76_RS08645 0.14 -0.1
1,823,441 - BWI76_RS08645 0.15 -1.5

Or see this region's nucleotide sequence