Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07800 and BWI76_RS07805 overlap by 4 nucleotides BWI76_RS07805 and BWI76_RS07810 are separated by 20 nucleotides
BWI76_RS07800: BWI76_RS07800 - ABC transporter, at 1,652,996 to 1,654,498
_RS07800
BWI76_RS07805: BWI76_RS07805 - sugar ABC transporter permease, at 1,654,495 to 1,655,493
_RS07805
BWI76_RS07810: BWI76_RS07810 - sugar ABC transporter periplasmic sugar-binding protein, at 1,655,514 to 1,656,578
_RS07810
Position (kb)
1654
1655
1656 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1653.573 kb on - strand, within BWI76_RS07800 at 1653.717 kb on + strand, within BWI76_RS07800 at 1653.725 kb on - strand, within BWI76_RS07800 at 1653.762 kb on + strand, within BWI76_RS07800 at 1653.762 kb on + strand, within BWI76_RS07800 at 1653.770 kb on - strand, within BWI76_RS07800 at 1653.943 kb on - strand, within BWI76_RS07800 at 1654.821 kb on - strand, within BWI76_RS07805 at 1654.838 kb on - strand, within BWI76_RS07805 at 1655.123 kb on - strand, within BWI76_RS07805 at 1655.560 kb on - strand at 1655.888 kb on - strand, within BWI76_RS07810 at 1655.888 kb on - strand, within BWI76_RS07810 at 1655.956 kb on - strand, within BWI76_RS07810 at 1656.128 kb on + strand, within BWI76_RS07810 at 1656.194 kb on + strand, within BWI76_RS07810 at 1656.219 kb on - strand, within BWI76_RS07810 at 1656.337 kb on + strand, within BWI76_RS07810
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,653,573 - BWI76_RS07800 0.38 -2.1 1,653,717 + BWI76_RS07800 0.48 -3.5 1,653,725 - BWI76_RS07800 0.49 -1.6 1,653,762 + BWI76_RS07800 0.51 -0.9 1,653,762 + BWI76_RS07800 0.51 +0.9 1,653,770 - BWI76_RS07800 0.51 -0.5 1,653,943 - BWI76_RS07800 0.63 -1.2 1,654,821 - BWI76_RS07805 0.33 -1.9 1,654,838 - BWI76_RS07805 0.34 +0.9 1,655,123 - BWI76_RS07805 0.63 +1.0 1,655,560 - -0.5 1,655,888 - BWI76_RS07810 0.35 +0.1 1,655,888 - BWI76_RS07810 0.35 -0.1 1,655,956 - BWI76_RS07810 0.42 -0.1 1,656,128 + BWI76_RS07810 0.58 +0.9 1,656,194 + BWI76_RS07810 0.64 -0.2 1,656,219 - BWI76_RS07810 0.66 -0.2 1,656,337 + BWI76_RS07810 0.77 +0.6
Or see this region's nucleotide sequence