Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0147

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0146 and DVUA0147 are separated by 578 nucleotidesDVUA0147 and DVUA0148 are separated by 7 nucleotides DVUA0146: DVUA0146 - hypothetical protein (TIGR), at 191,285 to 191,755 DVUA0146 DVUA0147: DVUA0147 - conserved hypothetical protein (TIGR), at 192,334 to 193,575 DVUA0147 DVUA0148: DVUA0148 - major facilitator superfamily protein (TIGR), at 193,583 to 196,600 DVUA0148 Position (kb) 192 193 194Strain fitness (log2 ratio) -1 0 1 2at 191.347 kb on - strand, within DVUA0146at 191.399 kb on - strand, within DVUA0146at 191.399 kb on - strand, within DVUA0146at 191.458 kb on + strand, within DVUA0146at 191.541 kb on - strand, within DVUA0146at 191.599 kb on - strand, within DVUA0146at 191.674 kb on + strand, within DVUA0146at 191.682 kb on - strand, within DVUA0146at 191.731 kb on + strandat 191.744 kb on + strandat 191.776 kb on + strandat 191.844 kb on + strandat 191.844 kb on + strandat 191.862 kb on - strandat 191.886 kb on - strandat 191.891 kb on + strandat 191.926 kb on + strandat 191.937 kb on - strandat 191.946 kb on + strandat 191.948 kb on - strandat 192.005 kb on + strandat 192.127 kb on + strandat 192.140 kb on + strandat 192.185 kb on - strandat 192.214 kb on + strandat 192.216 kb on + strandat 192.254 kb on + strandat 192.266 kb on + strandat 192.274 kb on - strandat 192.289 kb on + strandat 192.289 kb on + strandat 192.372 kb on - strandat 192.487 kb on + strand, within DVUA0147at 192.487 kb on + strand, within DVUA0147at 192.495 kb on - strand, within DVUA0147at 192.495 kb on - strand, within DVUA0147at 192.495 kb on - strand, within DVUA0147at 192.495 kb on - strand, within DVUA0147at 192.602 kb on + strand, within DVUA0147at 192.620 kb on - strand, within DVUA0147at 192.638 kb on + strand, within DVUA0147at 192.710 kb on + strand, within DVUA0147at 192.725 kb on - strand, within DVUA0147at 192.831 kb on - strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.855 kb on - strand, within DVUA0147at 192.885 kb on - strand, within DVUA0147at 192.912 kb on - strand, within DVUA0147at 192.934 kb on + strand, within DVUA0147at 192.942 kb on - strand, within DVUA0147at 192.942 kb on - strand, within DVUA0147at 192.946 kb on + strand, within DVUA0147at 193.005 kb on + strand, within DVUA0147at 193.133 kb on + strand, within DVUA0147at 193.200 kb on + strand, within DVUA0147at 193.201 kb on + strand, within DVUA0147at 193.251 kb on + strand, within DVUA0147at 193.272 kb on + strand, within DVUA0147at 193.279 kb on + strand, within DVUA0147at 193.280 kb on - strand, within DVUA0147at 193.352 kb on + strand, within DVUA0147at 193.360 kb on - strand, within DVUA0147at 193.360 kb on - strand, within DVUA0147at 193.362 kb on + strand, within DVUA0147at 193.370 kb on - strand, within DVUA0147at 193.399 kb on + strand, within DVUA0147at 193.411 kb on + strand, within DVUA0147at 193.423 kb on + strand, within DVUA0147at 193.423 kb on + strand, within DVUA0147at 193.449 kb on + strand, within DVUA0147at 193.596 kb on + strandat 193.605 kb on - strandat 193.628 kb on - strandat 193.643 kb on + strandat 193.702 kb on - strandat 193.711 kb on + strandat 193.730 kb on + strandat 193.730 kb on + strandat 193.730 kb on + strandat 193.738 kb on - strandat 193.738 kb on - strandat 193.867 kb on - strandat 193.872 kb on - strandat 193.924 kb on - strand, within DVUA0148at 193.926 kb on + strand, within DVUA0148at 193.940 kb on + strand, within DVUA0148at 193.940 kb on + strand, within DVUA0148at 194.036 kb on + strand, within DVUA0148at 194.046 kb on - strand, within DVUA0148at 194.053 kb on + strand, within DVUA0148at 194.061 kb on - strand, within DVUA0148at 194.079 kb on + strand, within DVUA0148at 194.079 kb on + strand, within DVUA0148at 194.080 kb on - strand, within DVUA0148at 194.136 kb on + strand, within DVUA0148at 194.171 kb on + strand, within DVUA0148at 194.171 kb on - strand, within DVUA0148at 194.310 kb on + strand, within DVUA0148at 194.380 kb on + strand, within DVUA0148at 194.407 kb on + strand, within DVUA0148at 194.413 kb on - strand, within DVUA0148at 194.423 kb on - strand, within DVUA0148at 194.506 kb on - strand, within DVUA0148at 194.506 kb on - strand, within DVUA0148at 194.552 kb on - strand, within DVUA0148

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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191,347 - DVUA0146 0.13 +0.4
191,399 - DVUA0146 0.24 +0.2
191,399 - DVUA0146 0.24 +0.3
191,458 + DVUA0146 0.37 -0.6
191,541 - DVUA0146 0.54 +1.0
191,599 - DVUA0146 0.67 -1.7
191,674 + DVUA0146 0.83 -0.5
191,682 - DVUA0146 0.84 -0.5
191,731 + +0.2
191,744 + +0.1
191,776 + -0.5
191,844 + -0.6
191,844 + -0.1
191,862 - +0.8
191,886 - +0.2
191,891 + -1.0
191,926 + +0.5
191,937 - -0.1
191,946 + +0.9
191,948 - +0.1
192,005 + -0.5
192,127 + +0.7
192,140 + +0.4
192,185 - +0.1
192,214 + -0.9
192,216 + +1.2
192,254 + -0.9
192,266 + +0.0
192,274 - +1.8
192,289 + +0.9
192,289 + -0.4
192,372 - -0.6
192,487 + DVUA0147 0.12 -0.3
192,487 + DVUA0147 0.12 +0.2
192,495 - DVUA0147 0.13 +0.5
192,495 - DVUA0147 0.13 +1.2
192,495 - DVUA0147 0.13 +0.3
192,495 - DVUA0147 0.13 +2.4
192,602 + DVUA0147 0.22 +0.3
192,620 - DVUA0147 0.23 +0.0
192,638 + DVUA0147 0.24 +0.6
192,710 + DVUA0147 0.30 +0.9
192,725 - DVUA0147 0.31 +0.3
192,831 - DVUA0147 0.40 +0.2
192,847 + DVUA0147 0.41 +1.0
192,847 + DVUA0147 0.41 -0.5
192,847 + DVUA0147 0.41 +0.7
192,847 + DVUA0147 0.41 +0.3
192,855 - DVUA0147 0.42 +0.3
192,885 - DVUA0147 0.44 +0.1
192,912 - DVUA0147 0.47 +0.9
192,934 + DVUA0147 0.48 +0.3
192,942 - DVUA0147 0.49 +0.4
192,942 - DVUA0147 0.49 +0.3
192,946 + DVUA0147 0.49 +0.3
193,005 + DVUA0147 0.54 -0.1
193,133 + DVUA0147 0.64 -0.1
193,200 + DVUA0147 0.70 +1.2
193,201 + DVUA0147 0.70 +0.8
193,251 + DVUA0147 0.74 -0.0
193,272 + DVUA0147 0.76 -0.2
193,279 + DVUA0147 0.76 -0.0
193,280 - DVUA0147 0.76 +1.4
193,352 + DVUA0147 0.82 -0.2
193,360 - DVUA0147 0.83 +0.9
193,360 - DVUA0147 0.83 -0.2
193,362 + DVUA0147 0.83 +1.1
193,370 - DVUA0147 0.83 -0.1
193,399 + DVUA0147 0.86 +0.0
193,411 + DVUA0147 0.87 +0.4
193,423 + DVUA0147 0.88 -1.5
193,423 + DVUA0147 0.88 +0.5
193,449 + DVUA0147 0.90 +0.4
193,596 + -0.4
193,605 - -1.2
193,628 - +1.3
193,643 + +0.3
193,702 - +1.0
193,711 + +0.1
193,730 + -0.3
193,730 + -0.7
193,730 + +0.3
193,738 - +0.1
193,738 - -0.5
193,867 - -0.1
193,872 - +0.0
193,924 - DVUA0148 0.11 +0.1
193,926 + DVUA0148 0.11 +0.3
193,940 + DVUA0148 0.12 +0.4
193,940 + DVUA0148 0.12 +0.5
194,036 + DVUA0148 0.15 -1.2
194,046 - DVUA0148 0.15 -0.0
194,053 + DVUA0148 0.16 +0.1
194,061 - DVUA0148 0.16 +0.2
194,079 + DVUA0148 0.16 +0.1
194,079 + DVUA0148 0.16 -0.3
194,080 - DVUA0148 0.16 +0.2
194,136 + DVUA0148 0.18 -0.2
194,171 + DVUA0148 0.19 -0.0
194,171 - DVUA0148 0.19 +0.4
194,310 + DVUA0148 0.24 +0.2
194,380 + DVUA0148 0.26 +0.1
194,407 + DVUA0148 0.27 -0.2
194,413 - DVUA0148 0.28 +0.7
194,423 - DVUA0148 0.28 +0.3
194,506 - DVUA0148 0.31 -0.8
194,506 - DVUA0148 0.31 +0.1
194,552 - DVUA0148 0.32 +0.4

Or see this region's nucleotide sequence