Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1901

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1900 and DVU1901 are separated by 96 nucleotidesDVU1901 and DVU1902 are separated by 148 nucleotides DVU1900: DVU1900 - conserved hypothetical protein (TIGR), at 1,974,260 to 1,975,201 DVU1900 DVU1901: DVU1901 - peptidyl-prolyl cis-trans isomerase domain protein (TIGR), at 1,975,298 to 1,976,233 DVU1901 DVU1902: DVU1902 - conserved hypothetical protein (TIGR), at 1,976,382 to 1,977,320 DVU1902 Position (kb) 1975 1976 1977Strain fitness (log2 ratio) -1 0 1at 1974.416 kb on - strand, within DVU1900at 1974.509 kb on + strand, within DVU1900at 1974.542 kb on + strand, within DVU1900at 1974.696 kb on + strand, within DVU1900at 1974.851 kb on + strand, within DVU1900at 1974.859 kb on - strand, within DVU1900at 1975.016 kb on - strand, within DVU1900at 1975.046 kb on + strand, within DVU1900at 1975.087 kb on - strand, within DVU1900at 1976.289 kb on + strandat 1976.461 kb on - strandat 1976.461 kb on - strandat 1976.510 kb on + strand, within DVU1902at 1976.559 kb on + strand, within DVU1902at 1976.559 kb on - strand, within DVU1902at 1976.586 kb on + strand, within DVU1902at 1976.606 kb on + strand, within DVU1902at 1976.868 kb on + strand, within DVU1902at 1976.902 kb on - strand, within DVU1902at 1976.912 kb on - strand, within DVU1902at 1976.930 kb on + strand, within DVU1902at 1976.982 kb on - strand, within DVU1902at 1977.128 kb on - strand, within DVU1902at 1977.138 kb on - strand, within DVU1902at 1977.141 kb on + strand, within DVU1902

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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1,974,416 - DVU1900 0.17 -1.0
1,974,509 + DVU1900 0.26 -0.6
1,974,542 + DVU1900 0.30 +0.1
1,974,696 + DVU1900 0.46 +0.8
1,974,851 + DVU1900 0.63 +0.6
1,974,859 - DVU1900 0.64 -0.1
1,975,016 - DVU1900 0.80 -0.3
1,975,046 + DVU1900 0.83 +0.4
1,975,087 - DVU1900 0.88 -1.7
1,976,289 + -0.2
1,976,461 - -1.2
1,976,461 - -0.5
1,976,510 + DVU1902 0.14 +0.8
1,976,559 + DVU1902 0.19 -0.5
1,976,559 - DVU1902 0.19 -0.5
1,976,586 + DVU1902 0.22 -0.5
1,976,606 + DVU1902 0.24 -0.2
1,976,868 + DVU1902 0.52 +0.3
1,976,902 - DVU1902 0.55 -1.0
1,976,912 - DVU1902 0.56 -0.8
1,976,930 + DVU1902 0.58 +0.2
1,976,982 - DVU1902 0.64 -0.4
1,977,128 - DVU1902 0.79 -1.2
1,977,138 - DVU1902 0.81 -0.4
1,977,141 + DVU1902 0.81 -1.5

Or see this region's nucleotide sequence