Strain Fitness in Shewanella oneidensis MR-1 around SO3869

Experiment: LB - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB - with RNA protect
4,013,921	+		SO3866	0.73	+1.4
4,013,921	-		SO3866	0.73	+0.0
4,013,921	-		SO3866	0.73	-0.4
4,013,921	-		SO3866	0.73	+0.2
4,013,921	-		SO3866	0.73	-0.8
4,013,931	-		SO3866	0.74	+0.1
4,013,934	-		SO3866	0.74	+0.9
4,013,945	+		SO3866	0.75	-0.3
4,013,945	+		SO3866	0.75	-0.3
4,013,946	+		SO3866	0.75	-1.3
4,013,946	+		SO3866	0.75	-0.1
4,013,953	+		SO3866	0.76	+0.0
4,013,990	-		SO3866	0.79	+0.2
4,014,031	+		SO3866	0.83	-0.5
4,014,062	+		SO3866	0.86	-0.6
4,014,097	+		SO3866	0.89	+0.2
4,014,105	-		SO3866	0.89	+0.5
4,014,145	+				-0.9
4,014,185	+				+0.2
4,014,354	+		SO3867	0.52	-0.3
4,014,362	-		SO3867	0.55	+1.2
4,014,405	+		SO3867	0.74	-1.0
4,014,405	+		SO3867	0.74	-0.3
4,014,430	+		SO3867	0.85	+0.0
4,014,553	+				+0.5
4,014,692	+		SO3868	0.27	-0.9
4,014,693	+		SO3868	0.27	-0.6
4,014,757	+		SO3868	0.55	+0.4
4,014,757	+		SO3868	0.55	-0.9
4,014,765	-		SO3868	0.58	+2.2
4,014,766	-		SO3868	0.59	+1.1
4,014,820	-		SO3868	0.82	-0.4
4,014,822	-		SO3868	0.82	+0.4
4,014,857	+				-0.4
4,014,857	+				-0.5
4,014,913	+				+0.6
4,014,922	+				-0.3
4,014,936	-				-0.5
4,014,945	+				+0.5
4,014,987	-				-2.5
4,014,987	-				+0.1
4,015,003	-				-0.4
4,015,040	-		SO3869	0.12	+1.2
4,015,079	+		SO3869	0.16	+0.0
4,015,194	+		SO3869	0.27	-0.0
4,015,194	+		SO3869	0.27	-2.5
4,015,202	-		SO3869	0.28	-1.2
4,015,202	-		SO3869	0.28	+1.0
4,015,202	-		SO3869	0.28	+0.2
4,015,232	-		SO3869	0.31	+1.2
4,015,269	+		SO3869	0.34	+0.5
4,015,269	+		SO3869	0.34	+1.9
4,015,269	+		SO3869	0.34	-0.0
4,015,270	+		SO3869	0.34	+0.4
4,015,270	+		SO3869	0.34	+0.3
4,015,270	+		SO3869	0.34	-0.5
4,015,270	+		SO3869	0.34	+0.4
4,015,278	-		SO3869	0.35	-0.4
4,015,278	-		SO3869	0.35	+0.3
4,015,280	+		SO3869	0.35	+0.4
4,015,317	-		SO3869	0.39	-0.5
4,015,321	-		SO3869	0.39	+0.0
4,015,341	-		SO3869	0.41	-0.2
4,015,427	-		SO3869	0.49	+2.0
4,015,434	-		SO3869	0.50	+0.3
4,015,469	+		SO3869	0.53	+0.1
4,015,469	+		SO3869	0.53	-0.7
4,015,511	+		SO3869	0.57	+0.5
4,015,521	+		SO3869	0.58	-1.5
4,015,521	+		SO3869	0.58	-0.4
4,015,526	+		SO3869	0.59	-0.1
4,015,529	-		SO3869	0.59	+0.3
4,015,534	-		SO3869	0.60	-0.4
4,015,534	-		SO3869	0.60	-0.2
4,015,634	+		SO3869	0.69	+0.8
4,015,642	-		SO3869	0.70	+0.1
4,015,713	-		SO3869	0.77	-0.1
4,015,731	+		SO3869	0.78	+0.6
4,015,731	+		SO3869	0.78	+0.5
4,015,731	+		SO3869	0.78	+0.7
4,015,731	+		SO3869	0.78	+1.2
4,015,731	+		SO3869	0.78	-1.3
4,015,737	+		SO3869	0.79	-0.3
4,015,739	-				-1.0
4,015,739	-		SO3869	0.79	+0.4
4,015,739	-		SO3869	0.79	+0.1
4,015,744	-		SO3869	0.80	-0.1
4,015,753	+		SO3869	0.80	+0.5
4,015,753	+		SO3869	0.80	-0.3
4,015,753	+		SO3869	0.80	+0.8
4,015,753	+		SO3869	0.80	-0.5
4,015,755	+		SO3869	0.81	-1.0
4,015,755	+		SO3869	0.81	-0.3
4,015,755	+		SO3869	0.81	+0.1
4,015,761	-		SO3869	0.81	-0.0
4,015,764	-		SO3869	0.81	-0.4
4,015,777	+		SO3869	0.83	+1.4
4,015,792	+		SO3869	0.84	-0.8
4,015,793	+		SO3869	0.84	-0.2
4,015,800	-		SO3869	0.85	+0.0
4,015,810	+		SO3869	0.86	+0.2
4,015,810	+		SO3869	0.86	-0.1
4,015,810	-		SO3869	0.86	-0.3
4,015,818	-		SO3869	0.87	+0.0
4,015,818	-		SO3869	0.87	+1.2
4,015,818	-		SO3869	0.87	-0.2
4,015,818	-		SO3869	0.87	-1.8
4,015,857	+				+0.1
4,015,871	-				+0.3
4,015,901	+				+0.7
4,015,903	+				-0.1
4,015,909	-				-0.2
4,015,911	+				-1.2
4,015,911	-				+0.0
4,015,911	-				-0.5
4,015,911	-				+0.4
4,015,919	-				+1.1
4,015,922	-				+0.5
4,015,949	+				+1.0
4,015,949	+				-0.3
4,015,949	+				+0.0
4,016,006	+				-1.4
4,016,006	+				-0.0
4,016,011	+				-0.1
4,016,011	+				+2.6
4,016,014	-				+0.3
4,016,019	-				-0.7
4,016,019	-				-0.3
4,016,019	-				-1.2
4,016,019	-				-0.6
4,016,029	-				-0.2
4,016,031	-				+0.7
4,016,032	+				+0.6
4,016,033	-				-0.9
4,016,040	-				-0.3
4,016,046	+				-0.2
4,016,046	+				-0.4
4,016,046	+				-2.1
4,016,048	+				-1.7
4,016,048	+				+1.2
4,016,048	+				+0.3
4,016,048	+				-0.6
4,016,054	-				-1.5
4,016,054	-				-0.1
4,016,056	-				-1.6
4,016,056	-				+0.2
4,016,063	+				-0.4
4,016,063	+				+0.3
4,016,071	-				+0.6
4,016,071	-				+0.0
4,016,071	-				-0.7
4,016,071	-				+0.0
4,016,071	-				+0.9
4,016,073	+				+0.6
4,016,081	-				-0.3
4,016,085	-				+1.4
4,016,091	-				+0.0
4,016,121	+				+0.2
4,016,129	+				-1.1
4,016,137	-				+2.6
4,016,143	+				+1.1
4,016,145	-				-0.4
4,016,145	-				-0.8
4,016,151	+				-0.7
4,016,159	-				-0.6
4,016,169	+				+0.4
4,016,169	+				-0.7
4,016,172	+				-1.2
4,016,174	-				-0.1
4,016,177	-				+0.8
4,016,177	-				+0.9
4,016,179	-				-1.2
4,016,180	-				-0.1
4,016,180	-				-0.7
4,016,180	-				-0.3
4,016,195	+				-1.2
4,016,233	+				+0.2
4,016,241	-				+1.6
4,016,244	+				+0.0
4,016,253	-				-0.6
4,016,253	-				-1.2
4,016,319	+				+0.5
4,016,327	-				+0.4
4,016,337	-				-0.1
4,016,345	+				+1.0
4,016,355	+				+0.0
4,016,431	-				-0.2
4,016,433	+				-0.4
4,016,433	+				-0.9
4,016,433	+				+0.0
4,016,433	+				-0.3
4,016,433	+				+0.2
4,016,433	+				-0.0
4,016,433	+				+0.9
4,016,434	+				-0.0
4,016,434	+				+0.0
4,016,434	+				+1.2
4,016,435	+				-0.7
4,016,435	+				-0.9
4,016,440	+				-1.0
4,016,440	+				-2.4
4,016,440	+				+0.7
4,016,440	+				+0.4
4,016,441	-		SO3870	0.10	-0.7
4,016,441	-		SO3870	0.10	+0.4
4,016,441	-		SO3870	0.10	-0.4
4,016,441	-		SO3870	0.10	-0.6
4,016,441	-		SO3870	0.10	-0.0
4,016,441	-		SO3870	0.10	-0.1
4,016,441	-		SO3870	0.10	-0.1
4,016,441	-		SO3870	0.10	+1.5
4,016,441	-		SO3870	0.10	-0.8
4,016,441	-		SO3870	0.10	+1.5
4,016,441	-		SO3870	0.10	-2.1
4,016,448	+		SO3870	0.11	-0.2
4,016,448	+		SO3870	0.11	+0.3
4,016,448	+		SO3870	0.11	-0.8
4,016,448	+		SO3870	0.11	-0.1
4,016,448	+		SO3870	0.11	-0.0
4,016,448	+		SO3870	0.11	+0.3
4,016,448	+		SO3870	0.11	+0.1
4,016,448	+		SO3870	0.11	-0.4
4,016,448	+		SO3870	0.11	+0.5
4,016,448	+		SO3870	0.11	-0.4
4,016,448	+		SO3870	0.11	-1.0
4,016,448	+		SO3870	0.11	-0.7
4,016,448	+		SO3870	0.11	-0.5
4,016,448	+		SO3870	0.11	-0.2
4,016,448	+		SO3870	0.11	+0.7
4,016,448	-		SO3870	0.11	+1.4
4,016,456	-		SO3870	0.12	+0.1
4,016,456	-		SO3870	0.12	-0.1
4,016,456	-		SO3870	0.12	-1.8
4,016,456	-		SO3870	0.12	-0.1
4,016,456	-		SO3870	0.12	-1.5
4,016,481	+		SO3870	0.16	-0.2
4,016,483	+		SO3870	0.17	-0.4
4,016,483	+		SO3870	0.17	-1.1
4,016,489	-		SO3870	0.18	+1.5
4,016,491	-		SO3870	0.18	-1.5
4,016,491	-		SO3870	0.18	-0.4
4,016,496	-		SO3870	0.19	+0.2
4,016,496	-		SO3870	0.19	+0.3
4,016,496	-		SO3870	0.19	-0.3
4,016,496	-		SO3870	0.19	+0.4
4,016,496	-		SO3870	0.19	-0.2
4,016,496	-		SO3870	0.19	-0.8
4,016,508	-		SO3870	0.21	-1.0
4,016,508	-		SO3870	0.21	-0.8
4,016,533	+		SO3870	0.24	-0.6
4,016,534	+		SO3870	0.25	-0.8
4,016,539	+		SO3870	0.25	+0.4
4,016,541	-		SO3870	0.26	-0.4
4,016,544	-		SO3870	0.26	+1.0
4,016,547	-		SO3870	0.27	-0.5
4,016,554	+		SO3870	0.28	+0.9
4,016,554	+		SO3870	0.28	+0.3
4,016,554	+		SO3870	0.28	+1.4
4,016,554	+		SO3870	0.28	-1.1
4,016,554	+		SO3870	0.28	-0.8
4,016,554	+		SO3870	0.28	+0.5
4,016,554	+		SO3870	0.28	+0.3
4,016,554	+		SO3870	0.28	-0.7
4,016,554	+		SO3870	0.28	-0.4
4,016,554	+		SO3870	0.28	+0.0
4,016,554	+		SO3870	0.28	-0.2
4,016,554	+		SO3870	0.28	+0.6
4,016,554	+		SO3870	0.28	-0.2
4,016,554	+		SO3870	0.28	-1.5
4,016,554	+		SO3870	0.28	-0.7
4,016,554	+		SO3870	0.28	-0.1
4,016,554	+		SO3870	0.28	-0.8
4,016,554	+		SO3870	0.28	-0.0
4,016,554	+		SO3870	0.28	-0.1
4,016,554	+		SO3870	0.28	+0.0
4,016,555	-		SO3870	0.28	+0.7
4,016,561	+		SO3870	0.29	+1.1
4,016,561	-		SO3870	0.29	-1.2
4,016,562	-		SO3870	0.29	-0.2
4,016,562	-		SO3870	0.29	+1.9
4,016,562	-		SO3870	0.29	+1.0
4,016,562	-		SO3870	0.29	-0.4
4,016,562	-		SO3870	0.29	+0.3
4,016,562	-		SO3870	0.29	+0.4
4,016,562	-		SO3870	0.29	-0.7
4,016,562	-		SO3870	0.29	-1.0
4,016,562	-		SO3870	0.29	-0.1
4,016,566	+		SO3870	0.30	-1.4
4,016,566	+		SO3870	0.30	-0.5
4,016,567	-		SO3870	0.30	-2.5
4,016,574	-		SO3870	0.31	+0.4
4,016,574	-		SO3870	0.31	-0.3
4,016,574	-		SO3870	0.31	+2.6
4,016,574	-		SO3870	0.31	-0.2
4,016,578	+		SO3870	0.31	-1.9
4,016,578	+		SO3870	0.31	-0.8
4,016,578	+		SO3870	0.31	+1.6
4,016,599	+		SO3870	0.35	+0.0
4,016,604	+		SO3870	0.36	-0.2
4,016,612	-		SO3870	0.37	+0.1
4,016,615	+		SO3870	0.37	-1.2
4,016,622	+		SO3870	0.38	-2.5
4,016,622	-		SO3870	0.38	+0.5
4,016,622	-		SO3870	0.38	-1.0
4,016,627	+		SO3870	0.39	-0.5
4,016,630	-		SO3870	0.40	-0.1
4,016,634	-		SO3870	0.40	-0.5
4,016,640	-		SO3870	0.41	-0.0
4,016,668	+		SO3870	0.46	-0.0
4,016,669	+		SO3870	0.46	-0.4
4,016,669	+		SO3870	0.46	-0.4
4,016,669	+		SO3870	0.46	+0.6
4,016,676	-		SO3870	0.47	+0.5
4,016,700	+		SO3870	0.51	+0.0
4,016,708	+		SO3870	0.52	+0.3
4,016,708	-		SO3870	0.52	-1.2
4,016,708	-		SO3870	0.52	-1.2
4,016,714	+		SO3870	0.53	+0.2
4,016,714	+		SO3870	0.53	-0.8
4,016,714	+		SO3870	0.53	-0.3
4,016,714	+		SO3870	0.53	-2.0
4,016,714	+		SO3870	0.53	-1.5
4,016,716	-		SO3870	0.53	+1.6
4,016,719	+		SO3870	0.54	-0.5
4,016,722	-		SO3870	0.54	+0.0
4,016,722	-		SO3870	0.54	-0.7
4,016,722	-		SO3870	0.54	-0.9
4,016,727	-		SO3870	0.55	-0.5
4,016,727	-		SO3870	0.55	-0.3
4,016,727	-		SO3870	0.55	+1.6
4,016,734	-		SO3870	0.56	+0.0
4,016,751	+		SO3870	0.59	-0.4
4,016,751	+		SO3870	0.59	-0.3
4,016,751	+		SO3870	0.59	-0.9
4,016,759	-		SO3870	0.60	-0.7
4,016,759	-		SO3870	0.60	-1.0
4,016,793	-		SO3870	0.65	+0.2
4,016,818	+		SO3870	0.69	+0.1
4,016,818	+		SO3870	0.69	-0.1
4,016,826	-		SO3870	0.70	+0.1
4,016,828	+		SO3870	0.71	-0.2
4,016,828	+		SO3870	0.71	-0.8
4,016,836	-		SO3870	0.72	-0.8
4,016,836	-		SO3870	0.72	-0.5
4,016,852	+		SO3870	0.74	+0.0
4,016,860	-		SO3870	0.76	-0.0
4,016,909	+		SO3870	0.83	-0.8
4,016,915	+		SO3870	0.84	-0.9
4,016,915	+		SO3870	0.84	-0.7