Strain Fitness in Shewanella oneidensis MR-1 around SO2948

Experiment: LB - with RNA protect

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2946 and SO2947 are separated by 2 nucleotidesSO2947 and SO2948 are separated by 82 nucleotidesSO2948 and SO2949 are separated by 51 nucleotidesSO2949 and SO2950 overlap by 8 nucleotides SO2946: SO2946 - hypothetical protein (NCBI ptt file), at 3,084,700 to 3,085,488 SO2946 SO2947: SO2947 - hypothetical protein (NCBI ptt file), at 3,085,491 to 3,085,763 SO2947 SO2948: SO2948 - prophage LambdaSo, tail assembly protein K, putative (NCBI ptt file), at 3,085,846 to 3,086,559 SO2948 SO2949: SO2949 - prophage LambdaSo, minor tail protein L (NCBI ptt file), at 3,086,611 to 3,087,336 SO2949 SO2950: SO2950 - hypothetical protein (NCBI ptt file), at 3,087,329 to 3,087,988 SO2950 Position (kb) 3085 3086 3087Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3084.853 kb on - strand, within SO2946at 3084.853 kb on - strand, within SO2946at 3084.857 kb on + strand, within SO2946at 3084.891 kb on - strand, within SO2946at 3084.902 kb on - strand, within SO2946at 3084.902 kb on - strand, within SO2946at 3084.952 kb on - strand, within SO2946at 3084.969 kb on - strand, within SO2946at 3085.094 kb on + strand, within SO2946at 3085.094 kb on + strand, within SO2946at 3085.096 kb on + strand, within SO2946at 3085.154 kb on - strand, within SO2946at 3085.191 kb on + strand, within SO2946at 3085.221 kb on - strand, within SO2946at 3085.234 kb on - strand, within SO2946at 3085.305 kb on + strand, within SO2946at 3085.305 kb on + strand, within SO2946at 3085.305 kb on + strand, within SO2946at 3085.313 kb on - strand, within SO2946at 3085.313 kb on - strand, within SO2946at 3085.402 kb on + strand, within SO2946at 3085.402 kb on + strand, within SO2946at 3085.402 kb on - strand, within SO2946at 3085.445 kb on + strandat 3085.501 kb on + strandat 3085.561 kb on + strand, within SO2947at 3085.569 kb on - strand, within SO2947at 3085.596 kb on - strand, within SO2947at 3085.791 kb on - strandat 3085.918 kb on - strand, within SO2948at 3085.920 kb on - strand, within SO2948at 3085.979 kb on - strand, within SO2948at 3086.080 kb on + strand, within SO2948at 3086.192 kb on + strand, within SO2948at 3086.209 kb on + strand, within SO2948at 3086.219 kb on + strand, within SO2948at 3086.227 kb on - strand, within SO2948at 3086.292 kb on - strand, within SO2948at 3086.372 kb on + strand, within SO2948at 3086.615 kb on + strandat 3086.638 kb on - strandat 3086.647 kb on + strandat 3086.706 kb on + strand, within SO2949at 3086.709 kb on - strand, within SO2949at 3086.715 kb on - strand, within SO2949at 3086.720 kb on - strand, within SO2949at 3086.810 kb on - strand, within SO2949at 3086.876 kb on - strand, within SO2949at 3086.893 kb on - strand, within SO2949at 3087.008 kb on + strand, within SO2949at 3087.019 kb on + strand, within SO2949at 3087.128 kb on - strand, within SO2949at 3087.128 kb on - strand, within SO2949at 3087.138 kb on + strand, within SO2949at 3087.149 kb on + strand, within SO2949at 3087.162 kb on - strand, within SO2949at 3087.306 kb on + strandat 3087.306 kb on + strandat 3087.306 kb on + strandat 3087.306 kb on + strandat 3087.306 kb on + strandat 3087.314 kb on - strandat 3087.314 kb on - strandat 3087.376 kb on + strandat 3087.376 kb on + strandat 3087.383 kb on + strandat 3087.384 kb on - strandat 3087.384 kb on - strandat 3087.384 kb on - strandat 3087.384 kb on - strandat 3087.477 kb on - strand, within SO2950at 3087.477 kb on - strand, within SO2950

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Per-strain Table

Position Strand Gene LocusTag Fraction LB - with RNA protect
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3,084,853 - SO2946 0.19 +1.2
3,084,853 - SO2946 0.19 +1.0
3,084,857 + SO2946 0.20 +1.0
3,084,891 - SO2946 0.24 +1.5
3,084,902 - SO2946 0.26 +1.0
3,084,902 - SO2946 0.26 +0.7
3,084,952 - SO2946 0.32 +1.6
3,084,969 - SO2946 0.34 +1.3
3,085,094 + SO2946 0.50 +1.9
3,085,094 + SO2946 0.50 +0.9
3,085,096 + SO2946 0.50 +1.7
3,085,154 - SO2946 0.58 +1.0
3,085,191 + SO2946 0.62 +2.2
3,085,221 - SO2946 0.66 +0.4
3,085,234 - SO2946 0.68 +1.4
3,085,305 + SO2946 0.77 +0.5
3,085,305 + SO2946 0.77 +1.1
3,085,305 + SO2946 0.77 +1.6
3,085,313 - SO2946 0.78 -0.1
3,085,313 - SO2946 0.78 +0.9
3,085,402 + SO2946 0.89 +1.5
3,085,402 + SO2946 0.89 +0.3
3,085,402 - SO2946 0.89 +0.7
3,085,445 + -0.6
3,085,501 + +0.8
3,085,561 + SO2947 0.26 +1.3
3,085,569 - SO2947 0.29 +0.9
3,085,596 - SO2947 0.38 +1.8
3,085,791 - -2.2
3,085,918 - SO2948 0.10 +0.3
3,085,920 - SO2948 0.10 +1.2
3,085,979 - SO2948 0.19 +0.9
3,086,080 + SO2948 0.33 +3.1
3,086,192 + SO2948 0.48 -0.9
3,086,209 + SO2948 0.51 +1.4
3,086,219 + SO2948 0.52 +1.6
3,086,227 - SO2948 0.53 +1.1
3,086,292 - SO2948 0.62 +0.6
3,086,372 + SO2948 0.74 +1.6
3,086,615 + +0.7
3,086,638 - +2.3
3,086,647 + +0.6
3,086,706 + SO2949 0.13 +1.6
3,086,709 - SO2949 0.13 +1.6
3,086,715 - SO2949 0.14 +1.0
3,086,720 - SO2949 0.15 +1.1
3,086,810 - SO2949 0.27 +2.3
3,086,876 - SO2949 0.37 +2.2
3,086,893 - SO2949 0.39 +2.2
3,087,008 + SO2949 0.55 +0.9
3,087,019 + SO2949 0.56 +3.2
3,087,128 - SO2949 0.71 +1.6
3,087,128 - SO2949 0.71 +1.1
3,087,138 + SO2949 0.73 +2.5
3,087,149 + SO2949 0.74 +0.8
3,087,162 - SO2949 0.76 +3.0
3,087,306 + +1.4
3,087,306 + +1.4
3,087,306 + +0.7
3,087,306 + +2.4
3,087,306 + +0.9
3,087,314 - +0.9
3,087,314 - +1.4
3,087,376 + +0.6
3,087,376 + +1.0
3,087,383 + +0.3
3,087,384 - +0.7
3,087,384 - +0.8
3,087,384 - +1.4
3,087,384 - +2.2
3,087,477 - SO2950 0.22 +0.8
3,087,477 - SO2950 0.22 +1.5

Or see this region's nucleotide sequence