Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1271

Experiment: BG11 with Polymyxin B sulfate 0.0001953125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmgtE and Synpcc7942_1270 are separated by 189 nucleotidesSynpcc7942_1270 and Synpcc7942_1271 are separated by 12 nucleotidesSynpcc7942_1271 and Synpcc7942_1272 are separated by 58 nucleotidesSynpcc7942_1272 and Synpcc7942_1273 are separated by 50 nucleotides Synpcc7942_1269: mgtE - magnesium transporter, at 1,293,542 to 1,294,939 mgtE Synpcc7942_1270: Synpcc7942_1270 - hypothetical protein, at 1,295,129 to 1,295,425 _1270 Synpcc7942_1271: Synpcc7942_1271 - hypothetical protein, at 1,295,438 to 1,296,175 _1271 Synpcc7942_1272: Synpcc7942_1272 - hypothetical protein, at 1,296,234 to 1,296,761 _1272 Synpcc7942_1273: Synpcc7942_1273 - hypothetical protein, at 1,296,812 to 1,298,347 _1273 Position (kb) 1295 1296 1297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1294.935 kb on + strandat 1294.943 kb on - strandat 1294.946 kb on - strandat 1294.951 kb on - strandat 1294.951 kb on - strandat 1294.961 kb on - strandat 1294.979 kb on - strandat 1295.006 kb on - strandat 1295.048 kb on - strandat 1295.053 kb on - strandat 1295.054 kb on + strandat 1295.062 kb on - strandat 1295.064 kb on + strandat 1295.065 kb on + strandat 1295.072 kb on - strandat 1295.072 kb on - strandat 1295.073 kb on - strandat 1295.082 kb on + strandat 1295.107 kb on - strandat 1295.107 kb on - strandat 1295.403 kb on + strandat 1295.465 kb on - strandat 1295.471 kb on - strandat 1295.472 kb on - strandat 1296.170 kb on + strandat 1296.170 kb on + strandat 1296.170 kb on + strandat 1296.177 kb on + strandat 1296.256 kb on - strandat 1296.258 kb on + strandat 1296.276 kb on - strandat 1296.289 kb on - strand, within Synpcc7942_1272at 1296.296 kb on + strand, within Synpcc7942_1272at 1296.341 kb on + strand, within Synpcc7942_1272at 1296.377 kb on + strand, within Synpcc7942_1272at 1296.399 kb on + strand, within Synpcc7942_1272at 1296.410 kb on + strand, within Synpcc7942_1272at 1296.415 kb on + strand, within Synpcc7942_1272at 1296.415 kb on + strand, within Synpcc7942_1272at 1296.415 kb on + strand, within Synpcc7942_1272at 1296.415 kb on + strand, within Synpcc7942_1272at 1296.415 kb on + strand, within Synpcc7942_1272at 1296.420 kb on + strand, within Synpcc7942_1272at 1296.423 kb on - strand, within Synpcc7942_1272at 1296.423 kb on - strand, within Synpcc7942_1272at 1296.423 kb on - strand, within Synpcc7942_1272at 1296.433 kb on - strand, within Synpcc7942_1272at 1296.454 kb on + strand, within Synpcc7942_1272at 1296.458 kb on + strand, within Synpcc7942_1272at 1296.467 kb on - strand, within Synpcc7942_1272at 1296.527 kb on + strand, within Synpcc7942_1272at 1296.533 kb on + strand, within Synpcc7942_1272at 1296.541 kb on - strand, within Synpcc7942_1272at 1296.541 kb on - strand, within Synpcc7942_1272at 1296.559 kb on - strand, within Synpcc7942_1272at 1296.561 kb on + strand, within Synpcc7942_1272at 1296.561 kb on + strand, within Synpcc7942_1272at 1296.569 kb on - strand, within Synpcc7942_1272at 1296.570 kb on + strand, within Synpcc7942_1272at 1296.636 kb on - strand, within Synpcc7942_1272at 1296.640 kb on + strand, within Synpcc7942_1272at 1296.648 kb on + strand, within Synpcc7942_1272at 1296.648 kb on - strand, within Synpcc7942_1272at 1296.648 kb on - strand, within Synpcc7942_1272at 1296.648 kb on - strand, within Synpcc7942_1272at 1296.656 kb on - strand, within Synpcc7942_1272at 1296.680 kb on + strand, within Synpcc7942_1272at 1296.680 kb on + strand, within Synpcc7942_1272at 1296.688 kb on - strand, within Synpcc7942_1272at 1296.694 kb on + strand, within Synpcc7942_1272at 1296.699 kb on + strand, within Synpcc7942_1272at 1296.708 kb on - strand, within Synpcc7942_1272at 1296.722 kb on + strandat 1296.748 kb on - strandat 1296.775 kb on + strandat 1296.775 kb on + strandat 1296.780 kb on + strandat 1296.783 kb on - strandat 1296.823 kb on + strandat 1296.823 kb on + strandat 1296.823 kb on + strandat 1296.823 kb on + strandat 1296.831 kb on - strandat 1296.831 kb on - strandat 1296.831 kb on - strandat 1296.831 kb on - strandat 1296.831 kb on - strandat 1296.892 kb on + strandat 1296.911 kb on - strandat 1296.921 kb on - strandat 1296.939 kb on + strandat 1296.946 kb on - strandat 1296.961 kb on + strandat 1296.971 kb on + strand, within Synpcc7942_1273at 1297.004 kb on - strandat 1297.004 kb on - strand, within Synpcc7942_1273at 1297.004 kb on - strand, within Synpcc7942_1273at 1297.004 kb on - strand, within Synpcc7942_1273at 1297.019 kb on + strand, within Synpcc7942_1273at 1297.027 kb on - strand, within Synpcc7942_1273at 1297.053 kb on + strand, within Synpcc7942_1273at 1297.059 kb on - strand, within Synpcc7942_1273at 1297.085 kb on - strand, within Synpcc7942_1273at 1297.093 kb on + strand, within Synpcc7942_1273at 1297.095 kb on - strand, within Synpcc7942_1273at 1297.095 kb on - strand, within Synpcc7942_1273at 1297.099 kb on + strand, within Synpcc7942_1273at 1297.102 kb on - strand, within Synpcc7942_1273at 1297.129 kb on - strand, within Synpcc7942_1273at 1297.155 kb on + strand, within Synpcc7942_1273at 1297.155 kb on + strand, within Synpcc7942_1273at 1297.163 kb on - strand, within Synpcc7942_1273

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.0001953125 mg/ml
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1,294,935 + -1.1
1,294,943 - -1.0
1,294,946 - -1.7
1,294,951 - -1.2
1,294,951 - +0.5
1,294,961 - +0.2
1,294,979 - -0.5
1,295,006 - -1.1
1,295,048 - +0.3
1,295,053 - -0.5
1,295,054 + -0.3
1,295,062 - +0.3
1,295,064 + +2.2
1,295,065 + +0.3
1,295,072 - -0.5
1,295,072 - -1.6
1,295,073 - +0.0
1,295,082 + -0.2
1,295,107 - -0.4
1,295,107 - -0.8
1,295,403 + -0.1
1,295,465 - -1.0
1,295,471 - -1.9
1,295,472 - -2.9
1,296,170 + -0.8
1,296,170 + -1.4
1,296,170 + -1.6
1,296,177 + -2.0
1,296,256 - -0.4
1,296,258 + +0.4
1,296,276 - -2.0
1,296,289 - Synpcc7942_1272 0.10 -0.8
1,296,296 + Synpcc7942_1272 0.12 -2.1
1,296,341 + Synpcc7942_1272 0.20 -0.4
1,296,377 + Synpcc7942_1272 0.27 -1.3
1,296,399 + Synpcc7942_1272 0.31 -2.0
1,296,410 + Synpcc7942_1272 0.33 -0.6
1,296,415 + Synpcc7942_1272 0.34 +0.0
1,296,415 + Synpcc7942_1272 0.34 -0.0
1,296,415 + Synpcc7942_1272 0.34 -0.0
1,296,415 + Synpcc7942_1272 0.34 -1.0
1,296,415 + Synpcc7942_1272 0.34 +0.1
1,296,420 + Synpcc7942_1272 0.35 -1.0
1,296,423 - Synpcc7942_1272 0.36 -0.4
1,296,423 - Synpcc7942_1272 0.36 -1.4
1,296,423 - Synpcc7942_1272 0.36 -0.3
1,296,433 - Synpcc7942_1272 0.38 -1.7
1,296,454 + Synpcc7942_1272 0.42 +1.2
1,296,458 + Synpcc7942_1272 0.42 -1.0
1,296,467 - Synpcc7942_1272 0.44 -1.0
1,296,527 + Synpcc7942_1272 0.55 +0.7
1,296,533 + Synpcc7942_1272 0.57 -0.1
1,296,541 - Synpcc7942_1272 0.58 +2.1
1,296,541 - Synpcc7942_1272 0.58 -1.6
1,296,559 - Synpcc7942_1272 0.62 -0.9
1,296,561 + Synpcc7942_1272 0.62 -0.9
1,296,561 + Synpcc7942_1272 0.62 -1.4
1,296,569 - Synpcc7942_1272 0.63 -1.3
1,296,570 + Synpcc7942_1272 0.64 -1.0
1,296,636 - Synpcc7942_1272 0.76 +0.3
1,296,640 + Synpcc7942_1272 0.77 -1.0
1,296,648 + Synpcc7942_1272 0.78 -0.3
1,296,648 - Synpcc7942_1272 0.78 -0.8
1,296,648 - Synpcc7942_1272 0.78 -0.2
1,296,648 - Synpcc7942_1272 0.78 -1.5
1,296,656 - Synpcc7942_1272 0.80 -1.1
1,296,680 + Synpcc7942_1272 0.84 -1.5
1,296,680 + Synpcc7942_1272 0.84 +0.8
1,296,688 - Synpcc7942_1272 0.86 +0.5
1,296,694 + Synpcc7942_1272 0.87 -0.1
1,296,699 + Synpcc7942_1272 0.88 -1.4
1,296,708 - Synpcc7942_1272 0.90 -1.7
1,296,722 + -2.1
1,296,748 - +1.3
1,296,775 + -0.3
1,296,775 + -2.1
1,296,780 + -0.7
1,296,783 - +2.8
1,296,823 + -0.5
1,296,823 + +0.2
1,296,823 + -0.6
1,296,823 + +0.9
1,296,831 - +0.2
1,296,831 - -0.1
1,296,831 - -0.1
1,296,831 - -0.4
1,296,831 - -1.2
1,296,892 + -0.4
1,296,911 - -0.4
1,296,921 - -1.0
1,296,939 + -0.1
1,296,946 - +0.6
1,296,961 + +1.0
1,296,971 + Synpcc7942_1273 0.10 -1.4
1,297,004 - +0.9
1,297,004 - Synpcc7942_1273 0.12 +0.2
1,297,004 - Synpcc7942_1273 0.12 -1.5
1,297,004 - Synpcc7942_1273 0.12 -1.8
1,297,019 + Synpcc7942_1273 0.13 -1.1
1,297,027 - Synpcc7942_1273 0.14 +0.1
1,297,053 + Synpcc7942_1273 0.16 -1.5
1,297,059 - Synpcc7942_1273 0.16 +0.2
1,297,085 - Synpcc7942_1273 0.18 -0.7
1,297,093 + Synpcc7942_1273 0.18 +0.6
1,297,095 - Synpcc7942_1273 0.18 +0.2
1,297,095 - Synpcc7942_1273 0.18 +1.0
1,297,099 + Synpcc7942_1273 0.19 +0.1
1,297,102 - Synpcc7942_1273 0.19 -0.8
1,297,129 - Synpcc7942_1273 0.21 -1.4
1,297,155 + Synpcc7942_1273 0.22 -0.0
1,297,155 + Synpcc7942_1273 0.22 -0.2
1,297,163 - Synpcc7942_1273 0.23 -0.7

Or see this region's nucleotide sequence