Experiment: BG11 with Polymyxin B sulfate 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdxA and Synpcc7942_0805 overlap by 1 nucleotides Synpcc7942_0805 and Synpcc7942_0806 overlap by 1 nucleotides Synpcc7942_0806 and Synpcc7942_0807 are separated by 13 nucleotides
Synpcc7942_0804: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase, at 797,288 to 798,349
pdxA
Synpcc7942_0805: Synpcc7942_0805 - hypothetical protein, at 798,349 to 799,095
_0805
Synpcc7942_0806: Synpcc7942_0806 - hypothetical protein, at 799,095 to 799,826
_0806
Synpcc7942_0807: Synpcc7942_0807 - hypothetical protein, at 799,840 to 800,679
_0807
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 798.318 kb on + strand at 798.344 kb on + strand at 798.359 kb on + strand at 798.368 kb on + strand at 798.370 kb on + strand at 798.370 kb on + strand at 798.397 kb on + strand at 798.405 kb on - strand at 798.405 kb on - strand at 798.405 kb on - strand at 798.411 kb on + strand at 798.483 kb on + strand, within Synpcc7942_0805 at 798.502 kb on - strand at 798.538 kb on + strand, within Synpcc7942_0805 at 798.547 kb on - strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on + strand, within Synpcc7942_0805 at 798.557 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.565 kb on - strand, within Synpcc7942_0805 at 798.581 kb on + strand, within Synpcc7942_0805 at 798.583 kb on + strand, within Synpcc7942_0805 at 798.615 kb on - strand, within Synpcc7942_0805 at 798.629 kb on + strand, within Synpcc7942_0805 at 798.639 kb on + strand, within Synpcc7942_0805 at 798.661 kb on - strand, within Synpcc7942_0805 at 798.661 kb on - strand at 798.709 kb on + strand, within Synpcc7942_0805 at 798.715 kb on - strand, within Synpcc7942_0805 at 798.739 kb on - strand, within Synpcc7942_0805 at 798.743 kb on + strand, within Synpcc7942_0805 at 798.757 kb on + strand, within Synpcc7942_0805 at 798.765 kb on - strand, within Synpcc7942_0805 at 798.776 kb on - strand, within Synpcc7942_0805 at 798.794 kb on + strand, within Synpcc7942_0805 at 798.818 kb on - strand, within Synpcc7942_0805 at 798.838 kb on - strand at 798.841 kb on + strand, within Synpcc7942_0805 at 798.889 kb on + strand, within Synpcc7942_0805 at 798.889 kb on + strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.916 kb on + strand, within Synpcc7942_0805 at 798.965 kb on - strand, within Synpcc7942_0805 at 799.059 kb on - strand at 799.079 kb on - strand at 799.123 kb on - strand at 799.132 kb on + strand at 799.209 kb on + strand, within Synpcc7942_0806 at 799.219 kb on + strand, within Synpcc7942_0806 at 799.252 kb on - strand, within Synpcc7942_0806 at 799.257 kb on + strand, within Synpcc7942_0806 at 799.257 kb on + strand, within Synpcc7942_0806 at 799.265 kb on - strand, within Synpcc7942_0806 at 799.265 kb on - strand, within Synpcc7942_0806 at 799.285 kb on - strand, within Synpcc7942_0806 at 799.297 kb on + strand, within Synpcc7942_0806 at 799.302 kb on + strand, within Synpcc7942_0806 at 799.324 kb on + strand, within Synpcc7942_0806 at 799.324 kb on + strand, within Synpcc7942_0806 at 799.332 kb on - strand, within Synpcc7942_0806 at 799.334 kb on + strand, within Synpcc7942_0806 at 799.342 kb on - strand, within Synpcc7942_0806 at 799.344 kb on - strand, within Synpcc7942_0806 at 799.354 kb on - strand, within Synpcc7942_0806 at 799.354 kb on - strand, within Synpcc7942_0806 at 799.381 kb on + strand, within Synpcc7942_0806 at 799.399 kb on + strand, within Synpcc7942_0806 at 799.520 kb on + strand, within Synpcc7942_0806 at 799.540 kb on + strand, within Synpcc7942_0806 at 799.548 kb on - strand, within Synpcc7942_0806 at 799.548 kb on - strand, within Synpcc7942_0806 at 799.548 kb on - strand, within Synpcc7942_0806 at 799.562 kb on - strand, within Synpcc7942_0806 at 799.582 kb on + strand, within Synpcc7942_0806 at 799.582 kb on + strand, within Synpcc7942_0806 at 799.582 kb on + strand, within Synpcc7942_0806 at 799.658 kb on - strand, within Synpcc7942_0806 at 799.685 kb on + strand, within Synpcc7942_0806 at 799.687 kb on - strand, within Synpcc7942_0806 at 799.730 kb on + strand, within Synpcc7942_0806 at 799.742 kb on - strand, within Synpcc7942_0806 at 799.743 kb on - strand, within Synpcc7942_0806 at 799.768 kb on + strand at 799.787 kb on - strand at 799.794 kb on - strand at 799.798 kb on - strand at 799.823 kb on + strand at 799.857 kb on - strand at 799.900 kb on + strand at 799.910 kb on - strand at 799.910 kb on - strand at 799.927 kb on + strand, within Synpcc7942_0807 at 799.935 kb on - strand, within Synpcc7942_0807 at 799.945 kb on - strand, within Synpcc7942_0807 at 799.957 kb on + strand, within Synpcc7942_0807 at 799.957 kb on + strand, within Synpcc7942_0807 at 799.963 kb on - strand, within Synpcc7942_0807 at 800.012 kb on + strand, within Synpcc7942_0807 at 800.087 kb on - strand, within Synpcc7942_0807
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.0001953125 mg/ml remove 798,318 + -1.6 798,344 + -0.8 798,359 + -1.5 798,368 + -0.6 798,370 + -0.5 798,370 + -0.7 798,397 + -2.0 798,405 - -1.7 798,405 - -0.3 798,405 - -0.9 798,411 + -1.5 798,483 + Synpcc7942_0805 0.18 -1.4 798,502 - +0.7 798,538 + Synpcc7942_0805 0.25 -2.1 798,547 - Synpcc7942_0805 0.27 +2.3 798,557 + Synpcc7942_0805 0.28 -0.8 798,557 + Synpcc7942_0805 0.28 -1.2 798,557 + Synpcc7942_0805 0.28 -0.9 798,557 + Synpcc7942_0805 0.28 -0.2 798,557 + Synpcc7942_0805 0.28 -0.2 798,557 + Synpcc7942_0805 0.28 -1.4 798,557 + Synpcc7942_0805 0.28 -1.2 798,557 + Synpcc7942_0805 0.28 -0.7 798,557 - Synpcc7942_0805 0.28 -0.5 798,565 - Synpcc7942_0805 0.29 -0.3 798,565 - Synpcc7942_0805 0.29 -2.6 798,565 - Synpcc7942_0805 0.29 -0.9 798,565 - Synpcc7942_0805 0.29 -2.6 798,565 - Synpcc7942_0805 0.29 -0.2 798,565 - Synpcc7942_0805 0.29 -1.3 798,565 - Synpcc7942_0805 0.29 +0.5 798,581 + Synpcc7942_0805 0.31 -0.3 798,583 + Synpcc7942_0805 0.31 +0.5 798,615 - Synpcc7942_0805 0.36 -1.4 798,629 + Synpcc7942_0805 0.37 -1.1 798,639 + Synpcc7942_0805 0.39 -0.8 798,661 - Synpcc7942_0805 0.42 -1.0 798,661 - -0.3 798,709 + Synpcc7942_0805 0.48 -0.5 798,715 - Synpcc7942_0805 0.49 -1.5 798,739 - Synpcc7942_0805 0.52 -0.4 798,743 + Synpcc7942_0805 0.53 -2.0 798,757 + Synpcc7942_0805 0.55 -1.5 798,765 - Synpcc7942_0805 0.56 -0.3 798,776 - Synpcc7942_0805 0.57 -0.1 798,794 + Synpcc7942_0805 0.60 -0.8 798,818 - Synpcc7942_0805 0.63 +1.0 798,838 - +3.3 798,841 + Synpcc7942_0805 0.66 +1.3 798,889 + Synpcc7942_0805 0.72 -3.2 798,889 + Synpcc7942_0805 0.72 -2.4 798,897 - Synpcc7942_0805 0.73 -1.4 798,897 - Synpcc7942_0805 0.73 -2.1 798,897 - Synpcc7942_0805 0.73 -0.5 798,897 - Synpcc7942_0805 0.73 +0.1 798,916 + Synpcc7942_0805 0.76 -3.2 798,965 - Synpcc7942_0805 0.82 -0.5 799,059 - +0.6 799,079 - +0.1 799,123 - -0.1 799,132 + -0.5 799,209 + Synpcc7942_0806 0.16 -1.9 799,219 + Synpcc7942_0806 0.17 -1.6 799,252 - Synpcc7942_0806 0.21 -0.6 799,257 + Synpcc7942_0806 0.22 -2.0 799,257 + Synpcc7942_0806 0.22 -1.1 799,265 - Synpcc7942_0806 0.23 -1.2 799,265 - Synpcc7942_0806 0.23 -0.9 799,285 - Synpcc7942_0806 0.26 -1.6 799,297 + Synpcc7942_0806 0.28 -0.4 799,302 + Synpcc7942_0806 0.28 -1.1 799,324 + Synpcc7942_0806 0.31 -1.7 799,324 + Synpcc7942_0806 0.31 -0.4 799,332 - Synpcc7942_0806 0.32 -1.2 799,334 + Synpcc7942_0806 0.33 -1.3 799,342 - Synpcc7942_0806 0.34 -0.1 799,344 - Synpcc7942_0806 0.34 +0.6 799,354 - Synpcc7942_0806 0.35 -0.1 799,354 - Synpcc7942_0806 0.35 -0.9 799,381 + Synpcc7942_0806 0.39 -1.5 799,399 + Synpcc7942_0806 0.42 -0.7 799,520 + Synpcc7942_0806 0.58 -0.6 799,540 + Synpcc7942_0806 0.61 -1.4 799,548 - Synpcc7942_0806 0.62 -0.5 799,548 - Synpcc7942_0806 0.62 +0.3 799,548 - Synpcc7942_0806 0.62 -1.1 799,562 - Synpcc7942_0806 0.64 -1.2 799,582 + Synpcc7942_0806 0.67 +0.7 799,582 + Synpcc7942_0806 0.67 -1.8 799,582 + Synpcc7942_0806 0.67 -1.6 799,658 - Synpcc7942_0806 0.77 -0.8 799,685 + Synpcc7942_0806 0.81 -0.9 799,687 - Synpcc7942_0806 0.81 -0.8 799,730 + Synpcc7942_0806 0.87 -0.2 799,742 - Synpcc7942_0806 0.88 +1.7 799,743 - Synpcc7942_0806 0.89 +0.5 799,768 + +0.3 799,787 - +0.5 799,794 - -0.7 799,798 - -1.4 799,823 + -0.5 799,857 - +0.2 799,900 + -1.6 799,910 - +0.8 799,910 - +1.0 799,927 + Synpcc7942_0807 0.10 +0.5 799,935 - Synpcc7942_0807 0.11 -0.3 799,945 - Synpcc7942_0807 0.12 -0.9 799,957 + Synpcc7942_0807 0.14 +0.4 799,957 + Synpcc7942_0807 0.14 +0.1 799,963 - Synpcc7942_0807 0.15 +0.0 800,012 + Synpcc7942_0807 0.20 -0.6 800,087 - Synpcc7942_0807 0.29 +0.3
Or see this region's nucleotide sequence