Experiment: BG11 with Polymyxin B sulfate 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ahcY and Synpcc7942_0619 are separated by 52 nucleotides Synpcc7942_0619 and Synpcc7942_0620 are separated by 77 nucleotides Synpcc7942_0620 and Synpcc7942_0621 are separated by 144 nucleotides
Synpcc7942_0618: ahcY - S-adenosyl-L-homocysteine hydrolase, at 607,820 to 609,100
ahcY
Synpcc7942_0619: Synpcc7942_0619 - hypothetical protein, at 609,153 to 609,788
_0619
Synpcc7942_0620: Synpcc7942_0620 - hypothetical protein, at 609,866 to 610,570
_0620
Synpcc7942_0621: Synpcc7942_0621 - hypothetical protein, at 610,715 to 611,893
_0621
Position (kb) 609
610 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 609.081 kb on + strand at 609.087 kb on - strand at 609.094 kb on + strand at 609.094 kb on + strand at 609.094 kb on + strand at 609.102 kb on - strand at 609.102 kb on - strand at 609.104 kb on - strand at 609.104 kb on - strand at 609.117 kb on + strand at 609.117 kb on + strand at 609.117 kb on + strand at 609.125 kb on - strand at 609.125 kb on - strand at 609.125 kb on - strand at 609.184 kb on + strand at 609.184 kb on + strand at 609.192 kb on - strand at 609.192 kb on - strand at 609.197 kb on + strand at 609.199 kb on - strand at 609.217 kb on - strand, within Synpcc7942_0619 at 609.222 kb on - strand, within Synpcc7942_0619 at 609.244 kb on + strand, within Synpcc7942_0619 at 609.254 kb on + strand, within Synpcc7942_0619 at 609.262 kb on - strand, within Synpcc7942_0619 at 609.262 kb on - strand, within Synpcc7942_0619 at 609.282 kb on + strand, within Synpcc7942_0619 at 609.282 kb on + strand, within Synpcc7942_0619 at 609.282 kb on + strand, within Synpcc7942_0619 at 609.290 kb on - strand, within Synpcc7942_0619 at 609.297 kb on + strand, within Synpcc7942_0619 at 609.305 kb on - strand, within Synpcc7942_0619 at 609.331 kb on + strand, within Synpcc7942_0619 at 609.344 kb on + strand, within Synpcc7942_0619 at 609.344 kb on + strand, within Synpcc7942_0619 at 609.408 kb on - strand, within Synpcc7942_0619 at 609.408 kb on - strand, within Synpcc7942_0619 at 609.433 kb on + strand, within Synpcc7942_0619 at 609.463 kb on + strand, within Synpcc7942_0619 at 609.471 kb on - strand, within Synpcc7942_0619 at 609.606 kb on - strand, within Synpcc7942_0619 at 609.660 kb on + strand, within Synpcc7942_0619 at 609.665 kb on - strand, within Synpcc7942_0619 at 609.667 kb on + strand, within Synpcc7942_0619 at 609.699 kb on - strand, within Synpcc7942_0619 at 609.701 kb on + strand, within Synpcc7942_0619 at 609.701 kb on + strand, within Synpcc7942_0619 at 609.709 kb on + strand, within Synpcc7942_0619 at 609.710 kb on - strand at 609.724 kb on + strand, within Synpcc7942_0619 at 609.732 kb on - strand at 609.736 kb on + strand at 609.783 kb on + strand at 609.790 kb on - strand at 609.791 kb on - strand at 609.846 kb on - strand at 609.863 kb on - strand at 609.873 kb on - strand at 609.907 kb on - strand at 609.930 kb on - strand at 609.976 kb on + strand, within Synpcc7942_0620 at 609.983 kb on - strand, within Synpcc7942_0620 at 609.988 kb on - strand, within Synpcc7942_0620 at 610.073 kb on - strand at 610.096 kb on + strand, within Synpcc7942_0620 at 610.135 kb on - strand, within Synpcc7942_0620 at 610.149 kb on + strand, within Synpcc7942_0620 at 610.198 kb on + strand, within Synpcc7942_0620 at 610.198 kb on + strand, within Synpcc7942_0620 at 610.209 kb on + strand, within Synpcc7942_0620 at 610.234 kb on + strand, within Synpcc7942_0620 at 610.245 kb on - strand, within Synpcc7942_0620 at 610.267 kb on + strand, within Synpcc7942_0620 at 610.273 kb on + strand, within Synpcc7942_0620 at 610.326 kb on - strand, within Synpcc7942_0620 at 610.326 kb on - strand, within Synpcc7942_0620 at 610.342 kb on - strand, within Synpcc7942_0620 at 610.346 kb on + strand, within Synpcc7942_0620 at 610.354 kb on - strand, within Synpcc7942_0620 at 610.354 kb on - strand, within Synpcc7942_0620 at 610.371 kb on - strand, within Synpcc7942_0620 at 610.401 kb on + strand, within Synpcc7942_0620 at 610.401 kb on + strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.423 kb on + strand, within Synpcc7942_0620 at 610.423 kb on - strand, within Synpcc7942_0620 at 610.446 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.463 kb on - strand, within Synpcc7942_0620 at 610.464 kb on - strand, within Synpcc7942_0620 at 610.464 kb on - strand, within Synpcc7942_0620 at 610.469 kb on - strand, within Synpcc7942_0620 at 610.477 kb on - strand, within Synpcc7942_0620 at 610.531 kb on + strand at 610.539 kb on - strand at 610.572 kb on - strand at 610.587 kb on + strand at 610.587 kb on + strand at 610.606 kb on - strand at 610.606 kb on - strand at 610.611 kb on + strand at 610.617 kb on + strand at 610.621 kb on + strand at 610.629 kb on - strand at 610.644 kb on + strand at 610.644 kb on + strand at 610.652 kb on - strand at 610.652 kb on - strand at 610.658 kb on + strand at 610.666 kb on - strand at 610.668 kb on + strand at 610.677 kb on - strand at 610.720 kb on - strand at 610.743 kb on + strand at 610.762 kb on - strand at 610.773 kb on + strand at 610.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.0001953125 mg/ml remove 609,081 + -1.1 609,087 - -1.3 609,094 + +0.9 609,094 + -0.4 609,094 + -1.8 609,102 - -1.6 609,102 - -0.7 609,104 - +0.7 609,104 - +0.2 609,117 + -1.3 609,117 + -4.3 609,117 + -1.1 609,125 - +0.5 609,125 - -2.6 609,125 - -0.2 609,184 + -2.5 609,184 + +0.7 609,192 - -0.7 609,192 - -1.4 609,197 + +0.7 609,199 - -1.1 609,217 - Synpcc7942_0619 0.10 -0.6 609,222 - Synpcc7942_0619 0.11 +0.7 609,244 + Synpcc7942_0619 0.14 -1.6 609,254 + Synpcc7942_0619 0.16 -1.4 609,262 - Synpcc7942_0619 0.17 -0.1 609,262 - Synpcc7942_0619 0.17 -1.2 609,282 + Synpcc7942_0619 0.20 -2.1 609,282 + Synpcc7942_0619 0.20 -2.0 609,282 + Synpcc7942_0619 0.20 -1.7 609,290 - Synpcc7942_0619 0.22 -0.4 609,297 + Synpcc7942_0619 0.23 -2.3 609,305 - Synpcc7942_0619 0.24 -0.7 609,331 + Synpcc7942_0619 0.28 -3.5 609,344 + Synpcc7942_0619 0.30 -0.5 609,344 + Synpcc7942_0619 0.30 +1.3 609,408 - Synpcc7942_0619 0.40 +0.2 609,408 - Synpcc7942_0619 0.40 -2.4 609,433 + Synpcc7942_0619 0.44 -1.4 609,463 + Synpcc7942_0619 0.49 -0.7 609,471 - Synpcc7942_0619 0.50 -5.0 609,606 - Synpcc7942_0619 0.71 -0.5 609,660 + Synpcc7942_0619 0.80 -1.1 609,665 - Synpcc7942_0619 0.81 -2.2 609,667 + Synpcc7942_0619 0.81 -2.3 609,699 - Synpcc7942_0619 0.86 -3.8 609,701 + Synpcc7942_0619 0.86 +0.3 609,701 + Synpcc7942_0619 0.86 -0.5 609,709 + Synpcc7942_0619 0.87 -0.7 609,710 - +0.3 609,724 + Synpcc7942_0619 0.90 -0.5 609,732 - -0.5 609,736 + -0.1 609,783 + -0.7 609,790 - +0.7 609,791 - -0.7 609,846 - -1.3 609,863 - -0.5 609,873 - -1.8 609,907 - -1.6 609,930 - +1.3 609,976 + Synpcc7942_0620 0.16 -2.3 609,983 - Synpcc7942_0620 0.17 -0.6 609,988 - Synpcc7942_0620 0.17 -0.1 610,073 - +0.3 610,096 + Synpcc7942_0620 0.33 -2.8 610,135 - Synpcc7942_0620 0.38 -0.3 610,149 + Synpcc7942_0620 0.40 +1.5 610,198 + Synpcc7942_0620 0.47 -1.4 610,198 + Synpcc7942_0620 0.47 -1.1 610,209 + Synpcc7942_0620 0.49 +0.9 610,234 + Synpcc7942_0620 0.52 -0.9 610,245 - Synpcc7942_0620 0.54 +0.7 610,267 + Synpcc7942_0620 0.57 -1.6 610,273 + Synpcc7942_0620 0.58 -0.2 610,326 - Synpcc7942_0620 0.65 +0.7 610,326 - Synpcc7942_0620 0.65 -1.1 610,342 - Synpcc7942_0620 0.68 -0.3 610,346 + Synpcc7942_0620 0.68 -0.4 610,354 - Synpcc7942_0620 0.69 -1.6 610,354 - Synpcc7942_0620 0.69 -1.7 610,371 - Synpcc7942_0620 0.72 +0.1 610,401 + Synpcc7942_0620 0.76 -1.1 610,401 + Synpcc7942_0620 0.76 -0.8 610,409 - Synpcc7942_0620 0.77 +0.2 610,409 - Synpcc7942_0620 0.77 -0.1 610,409 - Synpcc7942_0620 0.77 -1.1 610,423 + Synpcc7942_0620 0.79 +0.0 610,423 - Synpcc7942_0620 0.79 -0.3 610,446 + Synpcc7942_0620 0.82 +0.5 610,456 + Synpcc7942_0620 0.84 +2.3 610,456 + Synpcc7942_0620 0.84 -0.7 610,456 + Synpcc7942_0620 0.84 -0.7 610,463 - Synpcc7942_0620 0.85 +0.2 610,464 - Synpcc7942_0620 0.85 -0.0 610,464 - Synpcc7942_0620 0.85 -0.1 610,469 - Synpcc7942_0620 0.86 -1.5 610,477 - Synpcc7942_0620 0.87 -0.7 610,531 + +0.5 610,539 - -0.3 610,572 - +0.5 610,587 + +1.3 610,587 + +0.1 610,606 - +0.3 610,606 - +1.0 610,611 + +0.4 610,617 + -0.9 610,621 + +0.3 610,629 - -0.9 610,644 + +0.6 610,644 + -1.1 610,652 - +0.9 610,652 - +1.4 610,658 + -1.1 610,666 - -0.6 610,668 + +0.2 610,677 - +0.5 610,720 - +0.8 610,743 + +0.9 610,762 - -0.3 610,773 + +1.2 610,781 - +0.5
Or see this region's nucleotide sequence