Experiment: BG11 with Polymyxin B sulfate 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsN and nth are separated by 29 nucleotides nth and Synpcc7942_0448 overlap by 4 nucleotides Synpcc7942_0448 and serS are separated by 46 nucleotides
Synpcc7942_0446: rpsN - 30S ribosomal protein S14, at 436,519 to 436,821
rpsN
Synpcc7942_0447: nth - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III, at 436,851 to 437,537
nth
Synpcc7942_0448: Synpcc7942_0448 - YUP8H12.25 {{Arabidopsis thaliana}}-type protein. Metallo peptidase. MEROPS family M50B, at 437,534 to 438,628
_0448
Synpcc7942_0449: serS - seryl-tRNA synthetase, at 438,675 to 440,006
serS
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 436.889 kb on - strand at 436.918 kb on + strand at 436.950 kb on - strand, within nth at 436.950 kb on - strand, within nth at 436.975 kb on - strand, within nth at 437.036 kb on + strand, within nth at 437.041 kb on + strand, within nth at 437.108 kb on + strand at 437.139 kb on + strand, within nth at 437.139 kb on + strand, within nth at 437.139 kb on + strand at 437.147 kb on - strand, within nth at 437.147 kb on - strand at 437.147 kb on - strand, within nth at 437.147 kb on - strand, within nth at 437.152 kb on - strand, within nth at 437.173 kb on - strand, within nth at 437.174 kb on + strand, within nth at 437.218 kb on + strand, within nth at 437.225 kb on + strand, within nth at 437.236 kb on - strand, within nth at 437.300 kb on - strand, within nth at 437.339 kb on + strand, within nth at 437.339 kb on + strand, within nth at 437.467 kb on + strand, within nth at 437.467 kb on + strand, within nth at 437.467 kb on + strand, within nth at 437.475 kb on - strand at 437.475 kb on - strand at 437.477 kb on + strand at 437.477 kb on + strand at 437.485 kb on - strand at 437.528 kb on - strand at 437.545 kb on - strand at 437.556 kb on + strand at 437.564 kb on - strand at 437.564 kb on - strand at 437.604 kb on + strand at 437.604 kb on + strand at 437.615 kb on + strand at 437.628 kb on - strand at 437.629 kb on + strand at 437.630 kb on + strand at 437.637 kb on - strand at 437.666 kb on + strand, within Synpcc7942_0448 at 437.666 kb on + strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.674 kb on - strand, within Synpcc7942_0448 at 437.698 kb on - strand, within Synpcc7942_0448 at 437.730 kb on + strand, within Synpcc7942_0448 at 437.732 kb on + strand, within Synpcc7942_0448 at 437.754 kb on - strand, within Synpcc7942_0448 at 437.773 kb on + strand, within Synpcc7942_0448 at 437.834 kb on + strand, within Synpcc7942_0448 at 437.834 kb on + strand, within Synpcc7942_0448 at 437.842 kb on - strand, within Synpcc7942_0448 at 437.878 kb on + strand, within Synpcc7942_0448 at 437.886 kb on - strand, within Synpcc7942_0448 at 437.893 kb on - strand, within Synpcc7942_0448 at 437.945 kb on + strand, within Synpcc7942_0448 at 438.110 kb on - strand, within Synpcc7942_0448 at 438.124 kb on + strand, within Synpcc7942_0448 at 438.132 kb on - strand, within Synpcc7942_0448 at 438.151 kb on + strand, within Synpcc7942_0448 at 438.154 kb on - strand, within Synpcc7942_0448 at 438.154 kb on - strand, within Synpcc7942_0448 at 438.161 kb on + strand, within Synpcc7942_0448 at 438.161 kb on + strand, within Synpcc7942_0448 at 438.161 kb on + strand, within Synpcc7942_0448 at 438.169 kb on - strand, within Synpcc7942_0448 at 438.184 kb on - strand, within Synpcc7942_0448 at 438.248 kb on - strand, within Synpcc7942_0448 at 438.344 kb on + strand, within Synpcc7942_0448 at 438.347 kb on - strand, within Synpcc7942_0448 at 438.359 kb on + strand, within Synpcc7942_0448 at 438.359 kb on + strand, within Synpcc7942_0448 at 438.367 kb on - strand, within Synpcc7942_0448 at 438.385 kb on + strand, within Synpcc7942_0448 at 438.425 kb on - strand, within Synpcc7942_0448 at 438.458 kb on + strand, within Synpcc7942_0448 at 438.460 kb on - strand, within Synpcc7942_0448 at 438.466 kb on + strand, within Synpcc7942_0448 at 438.484 kb on + strand, within Synpcc7942_0448 at 438.486 kb on + strand, within Synpcc7942_0448 at 438.497 kb on + strand, within Synpcc7942_0448 at 438.497 kb on + strand, within Synpcc7942_0448 at 438.497 kb on + strand, within Synpcc7942_0448 at 438.505 kb on - strand, within Synpcc7942_0448 at 438.534 kb on + strand at 438.541 kb on + strand at 438.549 kb on - strand at 438.566 kb on - strand at 438.581 kb on - strand at 438.596 kb on + strand at 438.596 kb on + strand at 438.604 kb on - strand at 438.604 kb on - strand at 438.604 kb on - strand at 438.619 kb on + strand at 438.627 kb on - strand at 438.629 kb on + strand at 438.634 kb on + strand at 438.634 kb on + strand at 438.636 kb on + strand at 438.642 kb on - strand at 438.642 kb on - strand at 438.644 kb on - strand at 438.644 kb on - strand at 438.653 kb on + strand at 438.653 kb on + strand at 438.653 kb on - strand at 438.673 kb on + strand at 438.673 kb on + strand at 438.681 kb on - strand at 438.681 kb on - strand at 438.681 kb on - strand at 438.681 kb on - strand at 438.681 kb on - strand at 438.691 kb on - strand at 438.698 kb on + strand at 438.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.0001953125 mg/ml remove 436,889 - -0.1 436,918 + -0.6 436,950 - nth Synpcc7942_0447 0.14 +0.1 436,950 - nth Synpcc7942_0447 0.14 +0.8 436,975 - nth Synpcc7942_0447 0.18 -0.3 437,036 + nth Synpcc7942_0447 0.27 -0.2 437,041 + nth Synpcc7942_0447 0.28 -0.7 437,108 + +2.3 437,139 + nth Synpcc7942_0447 0.42 -0.2 437,139 + nth Synpcc7942_0447 0.42 -1.5 437,139 + +2.3 437,147 - nth Synpcc7942_0447 0.43 -1.1 437,147 - +0.3 437,147 - nth Synpcc7942_0447 0.43 +0.8 437,147 - nth Synpcc7942_0447 0.43 -1.0 437,152 - nth Synpcc7942_0447 0.44 +0.5 437,173 - nth Synpcc7942_0447 0.47 -0.6 437,174 + nth Synpcc7942_0447 0.47 -0.7 437,218 + nth Synpcc7942_0447 0.53 +0.6 437,225 + nth Synpcc7942_0447 0.54 +0.8 437,236 - nth Synpcc7942_0447 0.56 +1.0 437,300 - nth Synpcc7942_0447 0.65 +0.3 437,339 + nth Synpcc7942_0447 0.71 -0.2 437,339 + nth Synpcc7942_0447 0.71 -0.3 437,467 + nth Synpcc7942_0447 0.90 -0.4 437,467 + nth Synpcc7942_0447 0.90 -0.9 437,467 + nth Synpcc7942_0447 0.90 -0.6 437,475 - -0.8 437,475 - +0.1 437,477 + -0.9 437,477 + +0.7 437,485 - -0.2 437,528 - -1.6 437,545 - -0.3 437,556 + -0.5 437,564 - -0.5 437,564 - -0.7 437,604 + -2.6 437,604 + -1.2 437,615 + -0.4 437,628 - -1.0 437,629 + -2.6 437,630 + -1.7 437,637 - +0.1 437,666 + Synpcc7942_0448 0.12 -0.9 437,666 + Synpcc7942_0448 0.12 -0.5 437,674 - Synpcc7942_0448 0.13 -2.6 437,674 - Synpcc7942_0448 0.13 -3.1 437,674 - Synpcc7942_0448 0.13 -0.1 437,674 - Synpcc7942_0448 0.13 -1.8 437,698 - Synpcc7942_0448 0.15 -0.4 437,730 + Synpcc7942_0448 0.18 -3.0 437,732 + Synpcc7942_0448 0.18 -0.4 437,754 - Synpcc7942_0448 0.20 -1.3 437,773 + Synpcc7942_0448 0.22 -0.7 437,834 + Synpcc7942_0448 0.27 -3.1 437,834 + Synpcc7942_0448 0.27 -1.3 437,842 - Synpcc7942_0448 0.28 -2.0 437,878 + Synpcc7942_0448 0.31 -1.2 437,886 - Synpcc7942_0448 0.32 -0.9 437,893 - Synpcc7942_0448 0.33 -1.0 437,945 + Synpcc7942_0448 0.38 -0.5 438,110 - Synpcc7942_0448 0.53 -1.1 438,124 + Synpcc7942_0448 0.54 -1.7 438,132 - Synpcc7942_0448 0.55 -0.1 438,151 + Synpcc7942_0448 0.56 -2.3 438,154 - Synpcc7942_0448 0.57 -0.9 438,154 - Synpcc7942_0448 0.57 +1.0 438,161 + Synpcc7942_0448 0.57 -1.7 438,161 + Synpcc7942_0448 0.57 +1.0 438,161 + Synpcc7942_0448 0.57 -0.3 438,169 - Synpcc7942_0448 0.58 -0.5 438,184 - Synpcc7942_0448 0.59 -1.5 438,248 - Synpcc7942_0448 0.65 -0.6 438,344 + Synpcc7942_0448 0.74 -1.4 438,347 - Synpcc7942_0448 0.74 -0.9 438,359 + Synpcc7942_0448 0.75 -0.3 438,359 + Synpcc7942_0448 0.75 +0.9 438,367 - Synpcc7942_0448 0.76 -0.2 438,385 + Synpcc7942_0448 0.78 +1.5 438,425 - Synpcc7942_0448 0.81 -0.5 438,458 + Synpcc7942_0448 0.84 +0.1 438,460 - Synpcc7942_0448 0.85 -1.4 438,466 + Synpcc7942_0448 0.85 -1.3 438,484 + Synpcc7942_0448 0.87 -1.3 438,486 + Synpcc7942_0448 0.87 -2.0 438,497 + Synpcc7942_0448 0.88 -2.1 438,497 + Synpcc7942_0448 0.88 -0.3 438,497 + Synpcc7942_0448 0.88 -1.8 438,505 - Synpcc7942_0448 0.89 -1.2 438,534 + +0.1 438,541 + -1.1 438,549 - -1.0 438,566 - -1.3 438,581 - -1.5 438,596 + -2.8 438,596 + -2.1 438,604 - -0.3 438,604 - -0.1 438,604 - -1.2 438,619 + -0.3 438,627 - -0.2 438,629 + -1.5 438,634 + +0.1 438,634 + -1.3 438,636 + -0.2 438,642 - -0.2 438,642 - -0.8 438,644 - -1.1 438,644 - -0.7 438,653 + -1.1 438,653 + -0.5 438,653 - -3.7 438,673 + -2.0 438,673 + +0.4 438,681 - -0.1 438,681 - +0.1 438,681 - +0.6 438,681 - +0.1 438,681 - +0.1 438,691 - +0.1 438,698 + -0.0 438,706 - -0.4
Or see this region's nucleotide sequence