Experiment: BG11 with Polymyxin B sulfate 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotides Synpcc7942_0077 and Synpcc7942_0078 overlap by 4 nucleotides Synpcc7942_0078 and ycf41 are separated by 74 nucleotides ycf41 and Synpcc7942_0080 are separated by 63 nucleotides
Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852
_0076
Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617
_0077
Synpcc7942_0078: Synpcc7942_0078 - hypothetical protein, at 76,614 to 77,063
_0078
Synpcc7942_0079: ycf41 - conserved hypothetical protein YCF41, at 77,138 to 77,584
ycf41
Synpcc7942_0080: Synpcc7942_0080 - probable ABC transporter permease protein, at 77,648 to 78,871
_0080
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 75.693 kb on - strand, within Synpcc7942_0076 at 75.764 kb on - strand, within Synpcc7942_0076 at 75.791 kb on + strand at 75.799 kb on - strand at 75.799 kb on - strand at 75.996 kb on + strand at 75.999 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.085 kb on + strand, within Synpcc7942_0077 at 76.093 kb on - strand, within Synpcc7942_0077 at 76.215 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.248 kb on - strand, within Synpcc7942_0077 at 76.252 kb on - strand, within Synpcc7942_0077 at 76.306 kb on + strand, within Synpcc7942_0077 at 76.315 kb on - strand, within Synpcc7942_0077 at 76.319 kb on - strand, within Synpcc7942_0077 at 76.333 kb on - strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.342 kb on - strand, within Synpcc7942_0077 at 76.404 kb on + strand, within Synpcc7942_0077 at 76.419 kb on + strand, within Synpcc7942_0077 at 76.420 kb on + strand, within Synpcc7942_0077 at 76.422 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.566 kb on + strand at 76.574 kb on - strand at 76.619 kb on - strand at 76.626 kb on + strand at 76.640 kb on - strand at 76.674 kb on + strand, within Synpcc7942_0078 at 76.677 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.756 kb on - strand, within Synpcc7942_0078 at 76.770 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.783 kb on - strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.797 kb on + strand, within Synpcc7942_0078 at 76.886 kb on + strand at 76.889 kb on - strand, within Synpcc7942_0078 at 76.932 kb on - strand, within Synpcc7942_0078 at 76.956 kb on - strand, within Synpcc7942_0078 at 76.958 kb on - strand, within Synpcc7942_0078 at 77.016 kb on + strand, within Synpcc7942_0078 at 77.024 kb on - strand at 77.028 kb on + strand at 77.047 kb on + strand at 77.121 kb on + strand at 77.128 kb on - strand at 77.128 kb on - strand at 77.134 kb on - strand at 77.166 kb on - strand at 77.627 kb on + strand at 77.674 kb on + strand at 77.696 kb on + strand at 77.717 kb on - strand at 77.717 kb on - strand at 77.719 kb on + strand at 77.809 kb on + strand, within Synpcc7942_0080 at 77.811 kb on - strand, within Synpcc7942_0080 at 77.824 kb on + strand, within Synpcc7942_0080 at 77.827 kb on - strand, within Synpcc7942_0080 at 77.832 kb on - strand, within Synpcc7942_0080 at 77.832 kb on - strand, within Synpcc7942_0080 at 77.841 kb on + strand, within Synpcc7942_0080 at 77.843 kb on + strand, within Synpcc7942_0080 at 77.860 kb on - strand, within Synpcc7942_0080 at 77.871 kb on + strand, within Synpcc7942_0080 at 77.879 kb on - strand, within Synpcc7942_0080 at 77.879 kb on - strand, within Synpcc7942_0080 at 77.879 kb on - strand, within Synpcc7942_0080 at 77.881 kb on + strand, within Synpcc7942_0080 at 77.913 kb on + strand, within Synpcc7942_0080 at 77.923 kb on + strand, within Synpcc7942_0080 at 77.923 kb on + strand, within Synpcc7942_0080 at 77.931 kb on - strand, within Synpcc7942_0080 at 77.931 kb on - strand, within Synpcc7942_0080 at 77.949 kb on + strand, within Synpcc7942_0080 at 77.966 kb on - strand, within Synpcc7942_0080 at 78.019 kb on + strand, within Synpcc7942_0080 at 78.019 kb on + strand, within Synpcc7942_0080 at 78.019 kb on + strand, within Synpcc7942_0080 at 78.027 kb on - strand, within Synpcc7942_0080 at 78.027 kb on - strand, within Synpcc7942_0080 at 78.033 kb on - strand, within Synpcc7942_0080 at 78.039 kb on - strand, within Synpcc7942_0080 at 78.047 kb on + strand, within Synpcc7942_0080 at 78.047 kb on + strand, within Synpcc7942_0080
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.0001953125 mg/ml remove 75,693 - Synpcc7942_0076 0.79 +0.1 75,764 - Synpcc7942_0076 0.88 -1.2 75,791 + +0.4 75,799 - -0.8 75,799 - -2.6 75,996 + -1.7 75,999 - Synpcc7942_0077 0.10 -1.1 76,037 - Synpcc7942_0077 0.16 -1.0 76,037 - Synpcc7942_0077 0.16 +0.6 76,085 + Synpcc7942_0077 0.23 +0.3 76,093 - Synpcc7942_0077 0.24 +0.2 76,215 - Synpcc7942_0077 0.42 +0.2 76,243 - Synpcc7942_0077 0.46 -0.7 76,243 - Synpcc7942_0077 0.46 -2.0 76,243 - Synpcc7942_0077 0.46 -0.7 76,248 - Synpcc7942_0077 0.46 -0.3 76,252 - Synpcc7942_0077 0.47 -1.0 76,306 + Synpcc7942_0077 0.55 +0.7 76,315 - Synpcc7942_0077 0.56 -2.1 76,319 - Synpcc7942_0077 0.57 -0.3 76,333 - Synpcc7942_0077 0.59 -0.4 76,334 + Synpcc7942_0077 0.59 -0.5 76,334 + Synpcc7942_0077 0.59 -0.5 76,342 - Synpcc7942_0077 0.60 -0.5 76,404 + Synpcc7942_0077 0.69 +1.0 76,419 + Synpcc7942_0077 0.71 -1.0 76,420 + Synpcc7942_0077 0.71 +2.0 76,422 - Synpcc7942_0077 0.72 -1.0 76,497 - Synpcc7942_0077 0.82 +0.8 76,497 - Synpcc7942_0077 0.82 -1.5 76,532 - Synpcc7942_0077 0.88 -3.0 76,532 - Synpcc7942_0077 0.88 -0.2 76,566 + +0.3 76,574 - -0.4 76,619 - -0.6 76,626 + +0.2 76,640 - +1.0 76,674 + Synpcc7942_0078 0.13 +0.5 76,677 + Synpcc7942_0078 0.14 +1.7 76,743 + Synpcc7942_0078 0.29 -0.0 76,743 + Synpcc7942_0078 0.29 +0.8 76,743 + Synpcc7942_0078 0.29 +0.7 76,743 + Synpcc7942_0078 0.29 +0.8 76,743 + Synpcc7942_0078 0.29 +0.6 76,743 + Synpcc7942_0078 0.29 -0.9 76,743 + +0.6 76,743 + Synpcc7942_0078 0.29 +0.6 76,743 + Synpcc7942_0078 0.29 +0.7 76,751 - Synpcc7942_0078 0.30 -1.2 76,751 - Synpcc7942_0078 0.30 -1.1 76,751 - Synpcc7942_0078 0.30 -1.0 76,751 - Synpcc7942_0078 0.30 -0.0 76,751 - Synpcc7942_0078 0.30 -0.6 76,751 - Synpcc7942_0078 0.30 +2.7 76,751 - Synpcc7942_0078 0.30 +0.2 76,751 - Synpcc7942_0078 0.30 +0.7 76,756 - Synpcc7942_0078 0.32 +0.9 76,770 + Synpcc7942_0078 0.35 +0.1 76,775 + Synpcc7942_0078 0.36 +1.0 76,775 + Synpcc7942_0078 0.36 +1.6 76,775 + Synpcc7942_0078 0.36 +0.4 76,783 - Synpcc7942_0078 0.38 +1.4 76,796 + Synpcc7942_0078 0.40 -0.0 76,796 + Synpcc7942_0078 0.40 +0.9 76,797 + Synpcc7942_0078 0.41 +0.3 76,886 + -0.4 76,889 - Synpcc7942_0078 0.61 -1.2 76,932 - Synpcc7942_0078 0.71 -0.8 76,956 - Synpcc7942_0078 0.76 -1.0 76,958 - Synpcc7942_0078 0.76 -0.5 77,016 + Synpcc7942_0078 0.89 +0.2 77,024 - -0.2 77,028 + -1.3 77,047 + +0.5 77,121 + +1.4 77,128 - -0.4 77,128 - -1.2 77,134 - +1.0 77,166 - -0.1 77,627 + -0.9 77,674 + -0.9 77,696 + -0.6 77,717 - -0.4 77,717 - -1.1 77,719 + -2.9 77,809 + Synpcc7942_0080 0.13 -1.0 77,811 - Synpcc7942_0080 0.13 +0.2 77,824 + Synpcc7942_0080 0.14 -0.5 77,827 - Synpcc7942_0080 0.15 -0.7 77,832 - Synpcc7942_0080 0.15 -0.6 77,832 - Synpcc7942_0080 0.15 -0.3 77,841 + Synpcc7942_0080 0.16 -0.9 77,843 + Synpcc7942_0080 0.16 +1.0 77,860 - Synpcc7942_0080 0.17 -0.4 77,871 + Synpcc7942_0080 0.18 -1.4 77,879 - Synpcc7942_0080 0.19 +1.2 77,879 - Synpcc7942_0080 0.19 +0.6 77,879 - Synpcc7942_0080 0.19 -2.5 77,881 + Synpcc7942_0080 0.19 -0.8 77,913 + Synpcc7942_0080 0.22 +0.2 77,923 + Synpcc7942_0080 0.22 +0.3 77,923 + Synpcc7942_0080 0.22 +0.7 77,931 - Synpcc7942_0080 0.23 -1.8 77,931 - Synpcc7942_0080 0.23 -0.2 77,949 + Synpcc7942_0080 0.25 +0.3 77,966 - Synpcc7942_0080 0.26 +0.8 78,019 + Synpcc7942_0080 0.30 -0.6 78,019 + Synpcc7942_0080 0.30 -1.1 78,019 + Synpcc7942_0080 0.30 +0.6 78,027 - Synpcc7942_0080 0.31 -1.6 78,027 - Synpcc7942_0080 0.31 +0.2 78,033 - Synpcc7942_0080 0.31 -0.6 78,039 - Synpcc7942_0080 0.32 -1.6 78,047 + Synpcc7942_0080 0.33 +0.3 78,047 + Synpcc7942_0080 0.33 +0.9
Or see this region's nucleotide sequence