Experiment: BG11 with Polymyxin B sulfate 0.0001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0044 and Synpcc7942_0045 are separated by 94 nucleotides Synpcc7942_0045 and Synpcc7942_0046 are separated by 236 nucleotides
Synpcc7942_0044: Synpcc7942_0044 - hypothetical protein, at 41,495 to 43,477
_0044
Synpcc7942_0045: Synpcc7942_0045 - TPR repeat, at 43,572 to 44,927
_0045
Synpcc7942_0046: Synpcc7942_0046 - Methylase involved in ubiquinone/menaquinone biosynthesis-like, at 45,164 to 46,507
_0046
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 42.572 kb on - strand, within Synpcc7942_0044 at 42.579 kb on - strand at 42.581 kb on + strand, within Synpcc7942_0044 at 42.611 kb on - strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.670 kb on - strand, within Synpcc7942_0044 at 42.671 kb on - strand, within Synpcc7942_0044 at 42.673 kb on + strand, within Synpcc7942_0044 at 42.799 kb on + strand, within Synpcc7942_0044 at 42.814 kb on + strand, within Synpcc7942_0044 at 42.848 kb on + strand, within Synpcc7942_0044 at 42.848 kb on + strand, within Synpcc7942_0044 at 42.868 kb on - strand, within Synpcc7942_0044 at 42.877 kb on + strand, within Synpcc7942_0044 at 42.888 kb on + strand, within Synpcc7942_0044 at 42.900 kb on - strand, within Synpcc7942_0044 at 42.901 kb on + strand, within Synpcc7942_0044 at 42.909 kb on + strand, within Synpcc7942_0044 at 42.932 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.954 kb on - strand, within Synpcc7942_0044 at 42.978 kb on - strand, within Synpcc7942_0044 at 43.047 kb on + strand, within Synpcc7942_0044 at 43.053 kb on + strand, within Synpcc7942_0044 at 43.053 kb on + strand, within Synpcc7942_0044 at 43.086 kb on + strand, within Synpcc7942_0044 at 43.094 kb on - strand, within Synpcc7942_0044 at 43.094 kb on - strand, within Synpcc7942_0044 at 43.104 kb on + strand, within Synpcc7942_0044 at 43.119 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.151 kb on + strand, within Synpcc7942_0044 at 43.151 kb on + strand, within Synpcc7942_0044 at 43.153 kb on - strand, within Synpcc7942_0044 at 43.169 kb on - strand, within Synpcc7942_0044 at 43.201 kb on + strand, within Synpcc7942_0044 at 43.209 kb on - strand, within Synpcc7942_0044 at 43.241 kb on + strand, within Synpcc7942_0044 at 43.244 kb on - strand, within Synpcc7942_0044 at 43.244 kb on - strand, within Synpcc7942_0044 at 43.258 kb on + strand, within Synpcc7942_0044 at 43.266 kb on - strand, within Synpcc7942_0044 at 43.266 kb on - strand, within Synpcc7942_0044 at 43.268 kb on + strand at 43.268 kb on + strand, within Synpcc7942_0044 at 43.268 kb on + strand, within Synpcc7942_0044 at 43.270 kb on + strand, within Synpcc7942_0044 at 43.275 kb on + strand at 43.283 kb on - strand at 43.285 kb on + strand at 43.305 kb on + strand at 43.325 kb on - strand at 43.336 kb on + strand at 43.361 kb on + strand at 43.384 kb on + strand at 43.384 kb on + strand at 43.392 kb on - strand at 43.416 kb on - strand at 43.448 kb on - strand at 43.471 kb on + strand at 43.471 kb on + strand at 43.471 kb on + strand at 43.473 kb on + strand at 43.473 kb on + strand at 43.473 kb on + strand at 43.479 kb on - strand at 43.481 kb on - strand at 43.487 kb on - strand at 43.539 kb on - strand at 43.567 kb on + strand at 43.567 kb on + strand at 43.572 kb on - strand at 43.575 kb on - strand at 43.584 kb on - strand at 43.588 kb on + strand at 43.588 kb on + strand at 43.596 kb on - strand at 43.616 kb on - strand at 43.624 kb on - strand at 43.626 kb on - strand at 43.699 kb on + strand at 43.708 kb on + strand, within Synpcc7942_0045 at 43.718 kb on + strand, within Synpcc7942_0045 at 43.745 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand at 43.749 kb on + strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.766 kb on + strand, within Synpcc7942_0045 at 43.768 kb on + strand, within Synpcc7942_0045 at 43.779 kb on - strand at 43.796 kb on - strand, within Synpcc7942_0045 at 43.852 kb on + strand, within Synpcc7942_0045 at 43.852 kb on - strand, within Synpcc7942_0045 at 43.871 kb on + strand, within Synpcc7942_0045 at 43.872 kb on - strand, within Synpcc7942_0045 at 43.872 kb on - strand, within Synpcc7942_0045 at 43.893 kb on + strand, within Synpcc7942_0045 at 43.893 kb on + strand, within Synpcc7942_0045 at 43.896 kb on - strand, within Synpcc7942_0045 at 43.909 kb on - strand, within Synpcc7942_0045 at 43.918 kb on - strand, within Synpcc7942_0045 at 43.922 kb on + strand at 43.922 kb on + strand, within Synpcc7942_0045 at 43.931 kb on - strand, within Synpcc7942_0045 at 43.992 kb on + strand, within Synpcc7942_0045 at 43.999 kb on + strand, within Synpcc7942_0045 at 43.999 kb on + strand, within Synpcc7942_0045 at 44.004 kb on + strand, within Synpcc7942_0045 at 44.032 kb on - strand, within Synpcc7942_0045 at 44.032 kb on - strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.036 kb on + strand, within Synpcc7942_0045 at 44.036 kb on + strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.044 kb on - strand, within Synpcc7942_0045 at 44.059 kb on + strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.133 kb on + strand, within Synpcc7942_0045 at 44.138 kb on + strand, within Synpcc7942_0045 at 44.176 kb on - strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.329 kb on + strand, within Synpcc7942_0045 at 44.330 kb on - strand, within Synpcc7942_0045 at 44.345 kb on + strand, within Synpcc7942_0045 at 44.454 kb on - strand, within Synpcc7942_0045 at 44.512 kb on + strand, within Synpcc7942_0045 at 44.582 kb on + strand, within Synpcc7942_0045 at 44.590 kb on - strand, within Synpcc7942_0045 at 44.641 kb on - strand, within Synpcc7942_0045 at 44.759 kb on + strand, within Synpcc7942_0045 at 44.759 kb on - strand, within Synpcc7942_0045 at 44.793 kb on + strand at 44.812 kb on - strand at 44.839 kb on - strand at 44.839 kb on - strand at 44.859 kb on - strand at 44.885 kb on + strand at 44.921 kb on + strand at 44.929 kb on - strand at 44.936 kb on - strand at 44.950 kb on + strand at 44.955 kb on + strand at 44.963 kb on - strand at 44.963 kb on - strand at 44.963 kb on - strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.027 kb on + strand at 45.027 kb on - strand at 45.035 kb on - strand at 45.047 kb on - strand at 45.088 kb on + strand at 45.111 kb on - strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.123 kb on + strand at 45.130 kb on - strand at 45.160 kb on + strand at 45.204 kb on - strand at 45.206 kb on + strand at 45.216 kb on - strand at 45.225 kb on + strand at 45.225 kb on + strand at 45.233 kb on - strand at 45.246 kb on - strand at 45.269 kb on - strand at 45.318 kb on + strand, within Synpcc7942_0046 at 45.385 kb on - strand, within Synpcc7942_0046 at 45.519 kb on - strand, within Synpcc7942_0046 at 45.604 kb on + strand, within Synpcc7942_0046 at 45.630 kb on + strand, within Synpcc7942_0046 at 45.679 kb on - strand, within Synpcc7942_0046 at 45.755 kb on + strand, within Synpcc7942_0046 at 45.887 kb on + strand, within Synpcc7942_0046 at 45.892 kb on + strand, within Synpcc7942_0046 at 45.910 kb on - strand, within Synpcc7942_0046 at 45.911 kb on - strand, within Synpcc7942_0046
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.0001953125 mg/ml remove 42,572 - Synpcc7942_0044 0.54 -0.7 42,579 - -0.6 42,581 + Synpcc7942_0044 0.55 +0.2 42,611 - Synpcc7942_0044 0.56 -0.5 42,668 + Synpcc7942_0044 0.59 +1.5 42,668 + Synpcc7942_0044 0.59 -2.3 42,668 + Synpcc7942_0044 0.59 +1.2 42,670 - Synpcc7942_0044 0.59 +0.6 42,671 - Synpcc7942_0044 0.59 +0.0 42,673 + Synpcc7942_0044 0.59 -0.2 42,799 + Synpcc7942_0044 0.66 +0.4 42,814 + Synpcc7942_0044 0.67 +1.1 42,848 + Synpcc7942_0044 0.68 -1.2 42,848 + Synpcc7942_0044 0.68 +0.4 42,868 - Synpcc7942_0044 0.69 -1.0 42,877 + Synpcc7942_0044 0.70 -1.4 42,888 + Synpcc7942_0044 0.70 +0.2 42,900 - Synpcc7942_0044 0.71 -1.0 42,901 + Synpcc7942_0044 0.71 -0.6 42,909 + Synpcc7942_0044 0.71 -0.7 42,932 + Synpcc7942_0044 0.72 +0.0 42,938 + Synpcc7942_0044 0.73 -0.1 42,938 + Synpcc7942_0044 0.73 +0.4 42,938 + Synpcc7942_0044 0.73 -0.4 42,938 + Synpcc7942_0044 0.73 +0.4 42,946 - Synpcc7942_0044 0.73 +1.2 42,946 - Synpcc7942_0044 0.73 -0.9 42,946 - Synpcc7942_0044 0.73 +0.2 42,946 - Synpcc7942_0044 0.73 -0.3 42,946 - Synpcc7942_0044 0.73 -1.8 42,946 - Synpcc7942_0044 0.73 -0.1 42,954 - Synpcc7942_0044 0.74 +1.0 42,978 - Synpcc7942_0044 0.75 -0.9 43,047 + Synpcc7942_0044 0.78 -0.2 43,053 + Synpcc7942_0044 0.79 -1.6 43,053 + Synpcc7942_0044 0.79 +0.2 43,086 + Synpcc7942_0044 0.80 -0.2 43,094 - Synpcc7942_0044 0.81 -0.1 43,094 - Synpcc7942_0044 0.81 -0.2 43,104 + Synpcc7942_0044 0.81 +1.1 43,119 + Synpcc7942_0044 0.82 -2.8 43,145 + Synpcc7942_0044 0.83 -1.0 43,145 + Synpcc7942_0044 0.83 -0.7 43,145 + Synpcc7942_0044 0.83 -2.0 43,151 + Synpcc7942_0044 0.84 -0.8 43,151 + Synpcc7942_0044 0.84 -0.0 43,153 - Synpcc7942_0044 0.84 -1.0 43,169 - Synpcc7942_0044 0.84 +0.2 43,201 + Synpcc7942_0044 0.86 -0.7 43,209 - Synpcc7942_0044 0.86 -0.0 43,241 + Synpcc7942_0044 0.88 -1.3 43,244 - Synpcc7942_0044 0.88 +0.9 43,244 - Synpcc7942_0044 0.88 +0.9 43,258 + Synpcc7942_0044 0.89 +0.5 43,266 - Synpcc7942_0044 0.89 +0.3 43,266 - Synpcc7942_0044 0.89 -1.6 43,268 + +1.2 43,268 + Synpcc7942_0044 0.89 -2.4 43,268 + Synpcc7942_0044 0.89 +0.6 43,270 + Synpcc7942_0044 0.90 -0.8 43,275 + +1.6 43,283 - -2.9 43,285 + +0.3 43,305 + -0.3 43,325 - -0.1 43,336 + -0.6 43,361 + +0.8 43,384 + +0.1 43,384 + -0.8 43,392 - +0.8 43,416 - -0.1 43,448 - -2.0 43,471 + -1.8 43,471 + -0.9 43,471 + -1.2 43,473 + +0.1 43,473 + -0.5 43,473 + -0.6 43,479 - +0.8 43,481 - +0.5 43,487 - -1.2 43,539 - +2.2 43,567 + -0.3 43,567 + -1.0 43,572 - +0.4 43,575 - +0.4 43,584 - -1.2 43,588 + +0.2 43,588 + +0.1 43,596 - -0.6 43,616 - -1.3 43,624 - -0.6 43,626 - +0.7 43,699 + +1.3 43,708 + Synpcc7942_0045 0.10 +0.9 43,718 + Synpcc7942_0045 0.11 -0.4 43,745 + Synpcc7942_0045 0.13 +1.0 43,749 + Synpcc7942_0045 0.13 +0.9 43,749 + Synpcc7942_0045 0.13 +1.1 43,749 + Synpcc7942_0045 0.13 +0.3 43,749 + Synpcc7942_0045 0.13 -0.2 43,749 + Synpcc7942_0045 0.13 +1.2 43,749 + Synpcc7942_0045 0.13 -0.1 43,749 + +1.2 43,749 + Synpcc7942_0045 0.13 +0.5 43,757 - Synpcc7942_0045 0.14 -0.2 43,757 - Synpcc7942_0045 0.14 +0.6 43,757 - Synpcc7942_0045 0.14 +2.0 43,757 - Synpcc7942_0045 0.14 +0.4 43,766 + Synpcc7942_0045 0.14 +1.1 43,768 + Synpcc7942_0045 0.14 -0.3 43,779 - +0.2 43,796 - Synpcc7942_0045 0.17 -0.0 43,852 + Synpcc7942_0045 0.21 +0.6 43,852 - Synpcc7942_0045 0.21 +1.1 43,871 + Synpcc7942_0045 0.22 -1.7 43,872 - Synpcc7942_0045 0.22 +0.6 43,872 - Synpcc7942_0045 0.22 +0.8 43,893 + Synpcc7942_0045 0.24 +0.2 43,893 + Synpcc7942_0045 0.24 +3.2 43,896 - Synpcc7942_0045 0.24 -0.3 43,909 - Synpcc7942_0045 0.25 +0.7 43,918 - Synpcc7942_0045 0.26 -1.0 43,922 + +1.8 43,922 + Synpcc7942_0045 0.26 +0.4 43,931 - Synpcc7942_0045 0.26 +1.0 43,992 + Synpcc7942_0045 0.31 +0.4 43,999 + Synpcc7942_0045 0.31 +0.3 43,999 + Synpcc7942_0045 0.31 +0.2 44,004 + Synpcc7942_0045 0.32 -1.2 44,032 - Synpcc7942_0045 0.34 +0.2 44,032 - Synpcc7942_0045 0.34 -3.4 44,034 + Synpcc7942_0045 0.34 +1.9 44,034 + Synpcc7942_0045 0.34 -0.3 44,034 + Synpcc7942_0045 0.34 +1.0 44,034 + Synpcc7942_0045 0.34 -0.7 44,034 + Synpcc7942_0045 0.34 +0.5 44,036 + Synpcc7942_0045 0.34 +1.6 44,036 + Synpcc7942_0045 0.34 +2.5 44,042 - Synpcc7942_0045 0.35 +0.5 44,042 - Synpcc7942_0045 0.35 -1.0 44,042 - Synpcc7942_0045 0.35 -0.4 44,042 - Synpcc7942_0045 0.35 +0.1 44,042 - Synpcc7942_0045 0.35 +0.3 44,044 - Synpcc7942_0045 0.35 +0.8 44,059 + Synpcc7942_0045 0.36 +2.3 44,067 - Synpcc7942_0045 0.37 +0.2 44,067 - Synpcc7942_0045 0.37 -0.3 44,067 - Synpcc7942_0045 0.37 -0.6 44,133 + Synpcc7942_0045 0.41 +1.2 44,138 + Synpcc7942_0045 0.42 +1.2 44,176 - Synpcc7942_0045 0.45 -2.1 44,290 + Synpcc7942_0045 0.53 +0.9 44,290 + Synpcc7942_0045 0.53 -0.3 44,322 + Synpcc7942_0045 0.55 +0.4 44,322 + Synpcc7942_0045 0.55 +1.0 44,329 + Synpcc7942_0045 0.56 -0.2 44,330 - Synpcc7942_0045 0.56 +0.1 44,345 + Synpcc7942_0045 0.57 -0.5 44,454 - Synpcc7942_0045 0.65 +0.6 44,512 + Synpcc7942_0045 0.69 -2.0 44,582 + Synpcc7942_0045 0.74 -0.7 44,590 - Synpcc7942_0045 0.75 +0.4 44,641 - Synpcc7942_0045 0.79 +0.1 44,759 + Synpcc7942_0045 0.88 +0.2 44,759 - Synpcc7942_0045 0.88 +0.2 44,793 + -0.1 44,812 - +0.0 44,839 - -0.6 44,839 - +0.1 44,859 - +0.6 44,885 + +1.4 44,921 + -1.0 44,929 - -0.6 44,936 - -1.5 44,950 + -1.4 44,955 + +0.6 44,963 - +0.5 44,963 - +0.3 44,963 - +0.9 45,018 + +2.0 45,018 + +1.0 45,018 + -1.3 45,018 + +0.4 45,018 + -0.6 45,026 - +0.6 45,026 - -0.1 45,026 - -0.9 45,027 + -0.7 45,027 - +0.2 45,035 - +0.3 45,047 - -0.5 45,088 + -1.4 45,111 - -1.5 45,113 + -1.4 45,113 + -2.1 45,113 + -1.4 45,113 + +1.0 45,113 + +0.1 45,113 + +0.1 45,121 - +0.2 45,121 - +0.2 45,121 - -2.0 45,121 - -0.4 45,123 + +1.2 45,130 - -0.3 45,160 + +1.5 45,204 - -1.2 45,206 + -0.1 45,216 - -0.0 45,225 + -0.3 45,225 + -0.5 45,233 - -0.2 45,246 - +1.2 45,269 - +0.5 45,318 + Synpcc7942_0046 0.11 +0.4 45,385 - Synpcc7942_0046 0.16 +0.8 45,519 - Synpcc7942_0046 0.26 +1.4 45,604 + Synpcc7942_0046 0.33 +0.3 45,630 + Synpcc7942_0046 0.35 -1.0 45,679 - Synpcc7942_0046 0.38 -0.3 45,755 + Synpcc7942_0046 0.44 -0.6 45,887 + Synpcc7942_0046 0.54 +0.9 45,892 + Synpcc7942_0046 0.54 +0.7 45,910 - Synpcc7942_0046 0.56 -0.9 45,911 - Synpcc7942_0046 0.56 -0.3
Or see this region's nucleotide sequence