Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS35880 and RR42_RS35885 are separated by 316 nucleotides RR42_RS35885 and RR42_RS35890 are separated by 60 nucleotides
RR42_RS35880: RR42_RS35880 - integrase, at 3,498,037 to 3,499,017
_RS35880
RR42_RS35885: RR42_RS35885 - membrane protein, at 3,499,334 to 3,499,771
_RS35885
RR42_RS35890: RR42_RS35890 - 2-nitropropane dioxygenase, at 3,499,832 to 3,500,833
_RS35890
Position (kb)
3499
3500 Strain fitness (log2 ratio)
-2
-1
0
1 at 3498.386 kb on + strand, within RR42_RS35880 at 3498.387 kb on - strand, within RR42_RS35880 at 3498.750 kb on - strand, within RR42_RS35880 at 3498.756 kb on - strand, within RR42_RS35880 at 3498.878 kb on + strand, within RR42_RS35880 at 3499.012 kb on - strand at 3499.012 kb on - strand at 3499.051 kb on + strand at 3499.052 kb on - strand at 3499.052 kb on - strand at 3499.056 kb on + strand at 3499.131 kb on + strand at 3499.189 kb on + strand at 3499.189 kb on + strand at 3499.190 kb on - strand at 3499.232 kb on + strand at 3499.232 kb on + strand at 3499.233 kb on - strand at 3499.233 kb on - strand at 3499.233 kb on - strand at 3499.375 kb on - strand at 3499.642 kb on + strand, within RR42_RS35885 at 3499.790 kb on + strand at 3499.790 kb on + strand at 3499.790 kb on + strand at 3499.797 kb on - strand at 3499.810 kb on + strand at 3499.810 kb on + strand at 3499.810 kb on + strand at 3499.811 kb on - strand at 3499.811 kb on - strand at 3499.811 kb on - strand at 3499.811 kb on - strand at 3499.811 kb on - strand at 3500.132 kb on + strand, within RR42_RS35890 at 3500.132 kb on + strand, within RR42_RS35890 at 3500.132 kb on + strand, within RR42_RS35890 at 3500.133 kb on - strand, within RR42_RS35890 at 3500.133 kb on - strand, within RR42_RS35890 at 3500.144 kb on - strand, within RR42_RS35890 at 3500.199 kb on - strand, within RR42_RS35890 at 3500.199 kb on - strand, within RR42_RS35890 at 3500.199 kb on - strand, within RR42_RS35890 at 3500.438 kb on + strand, within RR42_RS35890 at 3500.438 kb on + strand, within RR42_RS35890 at 3500.438 kb on + strand, within RR42_RS35890 at 3500.438 kb on + strand, within RR42_RS35890 at 3500.439 kb on - strand, within RR42_RS35890 at 3500.531 kb on + strand, within RR42_RS35890 at 3500.531 kb on + strand, within RR42_RS35890 at 3500.531 kb on + strand, within RR42_RS35890 at 3500.532 kb on - strand, within RR42_RS35890 at 3500.546 kb on - strand, within RR42_RS35890 at 3500.564 kb on + strand, within RR42_RS35890 at 3500.564 kb on + strand, within RR42_RS35890 at 3500.564 kb on + strand, within RR42_RS35890 at 3500.564 kb on + strand, within RR42_RS35890 at 3500.564 kb on + strand, within RR42_RS35890 at 3500.564 kb on + strand, within RR42_RS35890 at 3500.565 kb on - strand, within RR42_RS35890 at 3500.713 kb on - strand, within RR42_RS35890 at 3500.753 kb on + strand at 3500.754 kb on - strand at 3500.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 3,498,386 + RR42_RS35880 0.36 +0.1 3,498,387 - RR42_RS35880 0.36 +0.1 3,498,750 - RR42_RS35880 0.73 +0.4 3,498,756 - RR42_RS35880 0.73 -1.0 3,498,878 + RR42_RS35880 0.86 -0.6 3,499,012 - +1.0 3,499,012 - +0.0 3,499,051 + +0.1 3,499,052 - +0.8 3,499,052 - +0.2 3,499,056 + -0.5 3,499,131 + -2.3 3,499,189 + +0.2 3,499,189 + +0.3 3,499,190 - +0.7 3,499,232 + -1.0 3,499,232 + -0.5 3,499,233 - -2.2 3,499,233 - -0.2 3,499,233 - +1.2 3,499,375 - -0.3 3,499,642 + RR42_RS35885 0.70 -0.7 3,499,790 + -0.9 3,499,790 + -0.3 3,499,790 + -0.7 3,499,797 - +0.6 3,499,810 + -1.8 3,499,810 + +0.2 3,499,810 + +0.2 3,499,811 - +0.3 3,499,811 - +0.3 3,499,811 - +0.3 3,499,811 - +0.2 3,499,811 - +0.6 3,500,132 + RR42_RS35890 0.30 +0.6 3,500,132 + RR42_RS35890 0.30 +0.2 3,500,132 + RR42_RS35890 0.30 +0.1 3,500,133 - RR42_RS35890 0.30 +0.3 3,500,133 - RR42_RS35890 0.30 -0.0 3,500,144 - RR42_RS35890 0.31 -1.3 3,500,199 - RR42_RS35890 0.37 +0.5 3,500,199 - RR42_RS35890 0.37 +0.2 3,500,199 - RR42_RS35890 0.37 +0.5 3,500,438 + RR42_RS35890 0.60 -0.3 3,500,438 + RR42_RS35890 0.60 +0.9 3,500,438 + RR42_RS35890 0.60 -1.2 3,500,438 + RR42_RS35890 0.60 -0.5 3,500,439 - RR42_RS35890 0.61 -0.4 3,500,531 + RR42_RS35890 0.70 -1.4 3,500,531 + RR42_RS35890 0.70 -0.3 3,500,531 + RR42_RS35890 0.70 +1.6 3,500,532 - RR42_RS35890 0.70 -1.5 3,500,546 - RR42_RS35890 0.71 +1.4 3,500,564 + RR42_RS35890 0.73 +0.1 3,500,564 + RR42_RS35890 0.73 -0.5 3,500,564 + RR42_RS35890 0.73 +1.4 3,500,564 + RR42_RS35890 0.73 -0.8 3,500,564 + RR42_RS35890 0.73 +0.6 3,500,564 + RR42_RS35890 0.73 -0.6 3,500,565 - RR42_RS35890 0.73 -0.6 3,500,713 - RR42_RS35890 0.88 +0.4 3,500,753 + -1.4 3,500,754 - +1.4 3,500,754 - -0.3
Or see this region's nucleotide sequence