Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35645

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
3,448,492	+		RR42_RS35635	0.49	-2.6
3,448,492	+		RR42_RS35635	0.49	-3.3
3,448,493	-		RR42_RS35635	0.49	+0.8
3,448,493	-		RR42_RS35635	0.49	+0.3
3,448,493	-		RR42_RS35635	0.49	+0.5
3,448,493	-		RR42_RS35635	0.49	-0.3
3,448,594	-		RR42_RS35635	0.78	+0.2
3,448,594	-		RR42_RS35635	0.78	+0.4
3,448,594	-		RR42_RS35635	0.78	+1.0
3,448,594	-		RR42_RS35635	0.78	-0.8
3,448,868	+		RR42_RS35640	0.24	-0.6
3,448,868	+		RR42_RS35640	0.24	-0.4
3,448,910	+		RR42_RS35640	0.30	-1.0
3,448,911	-		RR42_RS35640	0.30	+0.1
3,448,913	+		RR42_RS35640	0.30	-0.5
3,448,914	-		RR42_RS35640	0.30	-0.8
3,449,026	+		RR42_RS35640	0.45	-1.7
3,449,027	-		RR42_RS35640	0.45	+0.0
3,449,027	-		RR42_RS35640	0.45	-1.8
3,449,027	-		RR42_RS35640	0.45	-1.1
3,449,052	+		RR42_RS35640	0.49	-0.5
3,449,052	+		RR42_RS35640	0.49	-0.5
3,449,053	-		RR42_RS35640	0.49	+0.4
3,449,053	-		RR42_RS35640	0.49	+0.7
3,449,053	-		RR42_RS35640	0.49	-0.8
3,449,172	-		RR42_RS35640	0.64	-0.8
3,449,316	+		RR42_RS35640	0.83	-0.3
3,449,317	-		RR42_RS35640	0.84	+0.5
3,449,317	-		RR42_RS35640	0.84	+0.3
3,449,317	-		RR42_RS35640	0.84	+0.2
3,449,532	+				+0.3
3,449,533	-				+1.3
3,449,533	-				+0.1
3,449,549	+				-0.7
3,449,676	+		RR42_RS35645	0.19	+0.7
3,449,676	+		RR42_RS35645	0.19	-1.3
3,449,677	-		RR42_RS35645	0.19	+0.9
3,449,741	-		RR42_RS35645	0.24	-0.1
3,449,772	-		RR42_RS35645	0.26	-0.2
3,449,864	+		RR42_RS35645	0.33	-0.2
3,449,865	-		RR42_RS35645	0.33	-0.1
3,449,893	+		RR42_RS35645	0.35	-1.8
3,449,966	+		RR42_RS35645	0.41	-2.0
3,449,967	-		RR42_RS35645	0.41	+1.1
3,449,967	-		RR42_RS35645	0.41	+1.4
3,450,014	+		RR42_RS35645	0.45	-2.9
3,450,089	+		RR42_RS35645	0.51	-0.4
3,450,090	-		RR42_RS35645	0.51	-0.4
3,450,244	+		RR42_RS35645	0.62	-0.7
3,450,244	+		RR42_RS35645	0.62	-0.1
3,450,244	+		RR42_RS35645	0.62	+0.9
3,450,299	-		RR42_RS35645	0.67	+2.6
3,450,414	-		RR42_RS35645	0.75	-0.6
3,450,549	+		RR42_RS35645	0.86	-0.7
3,450,549	+		RR42_RS35645	0.86	-0.0
3,450,549	+		RR42_RS35645	0.86	+1.1
3,450,549	+		RR42_RS35645	0.86	-0.3
3,450,553	+		RR42_RS35645	0.86	-0.2
3,450,685	+				+0.5
3,450,685	+				-0.2
3,450,685	+				-1.7
3,450,685	+				-0.2
3,450,751	+				-3.2
3,450,752	-				-0.1
3,450,841	+		RR42_RS35650	0.10	+0.8
3,450,951	+		RR42_RS35650	0.37	+0.5
3,450,952	-		RR42_RS35650	0.38	-0.2
3,450,952	-		RR42_RS35650	0.38	+0.1
3,450,992	+		RR42_RS35650	0.47	-2.4
3,451,013	+		RR42_RS35650	0.53	-2.3
3,451,014	-		RR42_RS35650	0.53	+0.3
3,451,033	+		RR42_RS35650	0.58	+0.1
3,451,059	+		RR42_RS35650	0.64	+1.1
3,451,060	-		RR42_RS35650	0.64	+1.4
3,451,060	-		RR42_RS35650	0.64	-0.2
3,451,206	+				-0.3
3,451,206	+				+1.2
3,451,207	-				-1.0
3,451,210	+				-0.6
3,451,230	+				-1.1
3,451,231	-				-0.4
3,451,231	-				-1.3
3,451,231	-				+0.4
3,451,246	+				+0.4
3,451,246	+				-0.5
3,451,319	+				-3.2
3,451,425	+		RR42_RS35655	0.22	-0.6
3,451,425	+		RR42_RS35655	0.22	+0.5
3,451,426	-		RR42_RS35655	0.22	+0.7
3,451,566	+		RR42_RS35655	0.53	-0.1
3,451,566	+		RR42_RS35655	0.53	+1.3
3,451,566	+		RR42_RS35655	0.53	+0.5
3,451,571	+		RR42_RS35655	0.54	-0.2
3,451,571	+		RR42_RS35655	0.54	+0.1
3,451,571	+		RR42_RS35655	0.54	+0.6
3,451,571	+		RR42_RS35655	0.54	+0.3
3,451,572	-		RR42_RS35655	0.54	-0.6
3,451,572	-		RR42_RS35655	0.54	+0.2
3,451,592	+		RR42_RS35655	0.59	+0.3
3,451,593	-		RR42_RS35655	0.59	-1.7
3,451,670	+		RR42_RS35655	0.76	+0.2
3,451,670	+		RR42_RS35655	0.76	+0.7
3,451,670	+		RR42_RS35655	0.76	+1.0