Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35485

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
3,411,057	-		RR42_RS35480	0.28	+0.9
3,411,057	-		RR42_RS35480	0.28	+1.1
3,411,079	+		RR42_RS35480	0.29	+0.3
3,411,080	-		RR42_RS35480	0.29	+0.6
3,411,080	-		RR42_RS35480	0.29	-0.5
3,411,080	-		RR42_RS35480	0.29	+1.6
3,411,086	+		RR42_RS35480	0.30	+0.4
3,411,087	-		RR42_RS35480	0.30	-0.5
3,411,129	+		RR42_RS35480	0.34	+1.0
3,411,171	-		RR42_RS35480	0.37	+0.3
3,411,232	+		RR42_RS35480	0.42	+0.3
3,411,233	-		RR42_RS35480	0.42	+0.0
3,411,233	-		RR42_RS35480	0.42	-0.2
3,411,233	-		RR42_RS35480	0.42	-0.6
3,411,251	-		RR42_RS35480	0.44	-2.6
3,411,251	-		RR42_RS35480	0.44	-0.7
3,411,302	-		RR42_RS35480	0.48	+1.7
3,411,403	+		RR42_RS35480	0.56	-0.7
3,411,403	+		RR42_RS35480	0.56	+2.0
3,411,470	+		RR42_RS35480	0.62	+0.6
3,411,470	+		RR42_RS35480	0.62	+1.1
3,411,470	+		RR42_RS35480	0.62	-0.4
3,411,471	-		RR42_RS35480	0.62	-0.3
3,411,471	-		RR42_RS35480	0.62	+1.1
3,411,491	+		RR42_RS35480	0.64	-2.3
3,411,607	+		RR42_RS35480	0.73	+0.1
3,411,607	+		RR42_RS35480	0.73	-0.2
3,411,607	+		RR42_RS35480	0.73	-1.0
3,411,696	+		RR42_RS35480	0.81	+1.3
3,411,760	+		RR42_RS35480	0.86	+0.0
3,411,761	-		RR42_RS35480	0.86	+1.7
3,411,803	-		RR42_RS35480	0.90	-0.3
3,411,839	+				-0.9
3,412,038	-				+0.3
3,412,072	+				+0.4
3,412,072	+				+0.8
3,412,073	-				-0.7
3,412,101	+				-0.6
3,412,101	+				+0.1
3,412,101	+				-0.1
3,412,102	-				-0.1
3,412,210	+		RR42_RS35485	0.13	+0.2
3,412,211	-		RR42_RS35485	0.13	+0.5
3,412,265	-		RR42_RS35485	0.17	+0.4
3,412,267	-		RR42_RS35485	0.17	-0.5
3,412,301	-		RR42_RS35485	0.20	+0.4
3,412,322	+		RR42_RS35485	0.21	+0.5
3,412,335	+		RR42_RS35485	0.22	-1.9
3,412,336	-		RR42_RS35485	0.22	-0.3
3,412,336	-		RR42_RS35485	0.22	-1.2
3,412,430	+		RR42_RS35485	0.29	+0.3
3,412,430	+		RR42_RS35485	0.29	-1.5
3,412,431	-		RR42_RS35485	0.29	-0.6
3,412,431	-		RR42_RS35485	0.29	-0.6
3,412,431	-		RR42_RS35485	0.29	-2.8
3,412,537	+		RR42_RS35485	0.37	-0.9
3,412,538	-		RR42_RS35485	0.37	-0.1
3,412,538	-		RR42_RS35485	0.37	+1.4
3,412,561	-		RR42_RS35485	0.39	-1.4
3,412,561	-		RR42_RS35485	0.39	+1.7
3,412,892	-		RR42_RS35485	0.63	+0.7
3,412,899	+		RR42_RS35485	0.64	+0.1
3,412,899	+		RR42_RS35485	0.64	+1.3
3,413,018	+		RR42_RS35485	0.73	-1.3
3,413,018	+		RR42_RS35485	0.73	-1.7
3,413,022	+		RR42_RS35485	0.73	+0.3
3,413,068	+		RR42_RS35485	0.76	+0.5
3,413,068	+		RR42_RS35485	0.76	-1.3
3,413,068	+		RR42_RS35485	0.76	+0.3
3,413,119	+		RR42_RS35485	0.80	-0.5
3,413,119	+		RR42_RS35485	0.80	+0.0
3,413,120	-		RR42_RS35485	0.80	+0.6
3,413,330	-				+0.5
3,413,350	+				-2.7
3,413,350	+				-1.9
3,413,351	-				+0.2
3,413,351	-				-0.9
3,413,402	+				+0.1
3,413,403	-				+1.7
3,413,403	-				-0.4
3,413,403	-				+0.9
3,413,491	+		RR42_RS35490	0.19	-0.4
3,413,492	-		RR42_RS35490	0.19	-0.3
3,413,514	-		RR42_RS35490	0.23	-2.4
3,413,577	+		RR42_RS35490	0.32	-1.3
3,413,578	-		RR42_RS35490	0.32	-0.3
3,413,734	+		RR42_RS35490	0.56	-1.1
3,413,735	-		RR42_RS35490	0.56	-2.0
3,413,775	+		RR42_RS35490	0.62	-0.9
3,413,776	-		RR42_RS35490	0.62	-0.3
3,413,838	+		RR42_RS35490	0.71	+0.2
3,413,838	+		RR42_RS35490	0.71	-0.7
3,413,838	+		RR42_RS35490	0.71	+0.7
3,413,838	+		RR42_RS35490	0.71	-0.1
3,413,839	-		RR42_RS35490	0.72	-1.7
3,413,842	-		RR42_RS35490	0.72	+1.5
3,413,979	+				+0.1
3,414,016	-				-0.7
3,414,016	-				-2.2
3,414,097	+				-0.1
3,414,098	-				+0.1
3,414,098	-				+0.1
3,414,098	-				+0.6
3,414,109	-				+0.8
3,414,109	-				+0.1
3,414,125	+				+0.3
3,414,125	+				-1.4
3,414,150	-				-0.2
3,414,153	+				+2.7
3,414,154	-				-2.7
3,414,154	-				+0.3