Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35475

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
3,408,530	+				+0.2
3,408,588	+				-1.1
3,408,605	-				-1.6
3,408,605	-				+0.7
3,408,630	+				+2.0
3,408,630	+				+0.5
3,408,630	+				+0.2
3,408,631	-				-1.0
3,408,725	+				-0.4
3,408,726	-				+0.2
3,408,726	-				+0.3
3,408,750	+				-1.1
3,408,750	+				+0.3
3,408,751	-				-0.5
3,408,751	-				-0.1
3,408,846	-		RR42_RS35470	0.30	-0.2
3,408,906	-		RR42_RS35470	0.47	-0.3
3,408,953	+		RR42_RS35470	0.61	-0.8
3,408,954	-		RR42_RS35470	0.61	+1.9
3,408,966	+		RR42_RS35470	0.64	-0.7
3,408,966	+		RR42_RS35470	0.64	-1.2
3,408,967	-		RR42_RS35470	0.65	-1.1
3,409,019	-		RR42_RS35470	0.80	+0.3
3,409,019	-		RR42_RS35470	0.80	+0.7
3,409,021	-		RR42_RS35470	0.80	+0.7
3,409,045	+		RR42_RS35470	0.87	-0.2
3,409,045	+		RR42_RS35470	0.87	-0.1
3,409,045	+		RR42_RS35470	0.87	+0.4
3,409,046	-		RR42_RS35470	0.87	-1.3
3,409,046	-		RR42_RS35470	0.87	-0.7
3,409,109	+				-1.0
3,409,147	+				-1.7
3,409,165	-				+0.7
3,409,199	+				-2.3
3,409,209	-				-0.1
3,409,229	-				+0.4
3,409,229	-				+0.3
3,409,236	+				-0.2
3,409,286	+				-1.7
3,409,287	-				+1.5
3,409,287	-				-0.7
3,409,441	+				+0.6
3,409,442	-				+0.4
3,409,442	-				-0.7
3,409,450	-				+0.9
3,409,512	+				+1.3
3,409,513	-				-0.2
3,409,529	-		RR42_RS35475	0.11	-1.7
3,409,612	+		RR42_RS35475	0.21	+0.8
3,409,612	+		RR42_RS35475	0.21	+0.1
3,409,756	-		RR42_RS35475	0.37	+0.4
3,409,756	-		RR42_RS35475	0.37	-0.3
3,409,756	-		RR42_RS35475	0.37	+0.7
3,409,756	-		RR42_RS35475	0.37	-0.7
3,409,968	-		RR42_RS35475	0.61	+0.8
3,409,972	+		RR42_RS35475	0.62	-1.1
3,409,973	-		RR42_RS35475	0.62	-0.9
3,409,973	-		RR42_RS35475	0.62	+0.1
3,409,973	-		RR42_RS35475	0.62	+0.2
3,409,973	-		RR42_RS35475	0.62	-0.1
3,409,999	-		RR42_RS35475	0.65	+1.0
3,410,013	+		RR42_RS35475	0.66	+1.1
3,410,014	-		RR42_RS35475	0.67	+1.8
3,410,058	+		RR42_RS35475	0.72	+0.2
3,410,169	-		RR42_RS35475	0.84	-0.5
3,410,169	-		RR42_RS35475	0.84	-1.7
3,410,179	+		RR42_RS35475	0.85	-0.2
3,410,231	-				-0.1
3,410,236	+				+0.2
3,410,237	-				+0.9
3,410,237	-				-1.1
3,410,319	-				-0.8
3,410,363	+				+0.6
3,410,407	+				-0.3
3,410,419	+				-2.9
3,410,503	+				+0.4
3,410,504	-				-0.1
3,410,524	+				-3.6
3,410,524	+				-2.2
3,410,525	-				+0.3
3,410,556	+				-2.2
3,410,556	+				+1.7
3,410,557	-				-1.2
3,410,557	-				-0.1
3,410,557	-				+0.4
3,410,557	-				+2.8
3,410,559	+				-0.3
3,410,559	+				-0.9
3,410,559	+				+0.3
3,410,560	-				-0.5
3,410,722	-				-0.8
3,410,722	-				-0.3
3,410,727	+				-1.0
3,410,756	+				-0.7
3,410,757	-				-0.9
3,410,770	+				-1.9
3,410,770	+				+0.4
3,410,770	+				+0.9
3,410,770	+				-2.3
3,410,771	-				-0.9
3,410,771	-				-2.4
3,410,800	-				-0.1
3,410,800	-				+0.0
3,410,800	-				+0.6
3,410,819	+				+0.4
3,410,819	+				-0.3
3,410,819	+				-0.7
3,411,001	+		RR42_RS35480	0.23	-0.4
3,411,001	+		RR42_RS35480	0.23	-1.3
3,411,001	+		RR42_RS35480	0.23	-0.5
3,411,001	+		RR42_RS35480	0.23	+1.6
3,411,002	-		RR42_RS35480	0.23	+1.0
3,411,030	-		RR42_RS35480	0.25	+0.3
3,411,057	-		RR42_RS35480	0.28	+0.9
3,411,057	-		RR42_RS35480	0.28	+1.1
3,411,079	+		RR42_RS35480	0.29	+0.3
3,411,080	-		RR42_RS35480	0.29	+0.6
3,411,080	-		RR42_RS35480	0.29	-0.5
3,411,080	-		RR42_RS35480	0.29	+1.6
3,411,086	+		RR42_RS35480	0.30	+0.4
3,411,087	-		RR42_RS35480	0.30	-0.5
3,411,129	+		RR42_RS35480	0.34	+1.0
3,411,171	-		RR42_RS35480	0.37	+0.3
3,411,232	+		RR42_RS35480	0.42	+0.3
3,411,233	-		RR42_RS35480	0.42	+0.0
3,411,233	-		RR42_RS35480	0.42	-0.2
3,411,233	-		RR42_RS35480	0.42	-0.6
3,411,251	-		RR42_RS35480	0.44	-2.6
3,411,251	-		RR42_RS35480	0.44	-0.7
3,411,302	-		RR42_RS35480	0.48	+1.7