Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34530

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34525 and RR42_RS34530 overlap by 4 nucleotidesRR42_RS34530 and RR42_RS34535 are separated by 0 nucleotides RR42_RS34525: RR42_RS34525 - type VI secretion protein VasK, at 3,177,558 to 3,181,133 _RS34525 RR42_RS34530: RR42_RS34530 - hypothetical protein, at 3,181,130 to 3,182,371 _RS34530 RR42_RS34535: RR42_RS34535 - membrane protein, at 3,182,372 to 3,182,629 _RS34535 Position (kb) 3181 3182 3183Strain fitness (log2 ratio) -2 -1 0 1at 3180.810 kb on + strandat 3180.889 kb on + strandat 3180.890 kb on - strandat 3180.890 kb on - strandat 3180.950 kb on - strandat 3181.083 kb on + strandat 3181.091 kb on + strandat 3181.099 kb on + strandat 3181.099 kb on + strandat 3181.100 kb on - strandat 3181.100 kb on - strandat 3181.100 kb on - strandat 3181.100 kb on - strandat 3181.108 kb on - strandat 3181.124 kb on - strandat 3181.583 kb on + strand, within RR42_RS34530at 3181.584 kb on - strand, within RR42_RS34530at 3181.584 kb on - strand, within RR42_RS34530at 3181.694 kb on + strand, within RR42_RS34530at 3181.694 kb on + strand, within RR42_RS34530at 3181.695 kb on - strand, within RR42_RS34530at 3181.695 kb on - strand, within RR42_RS34530at 3181.695 kb on - strand, within RR42_RS34530at 3181.757 kb on + strand, within RR42_RS34530at 3181.758 kb on - strand, within RR42_RS34530at 3181.763 kb on + strand, within RR42_RS34530at 3181.764 kb on - strand, within RR42_RS34530at 3181.764 kb on - strand, within RR42_RS34530at 3181.847 kb on - strand, within RR42_RS34530at 3182.247 kb on + strandat 3182.248 kb on - strandat 3182.248 kb on - strandat 3182.373 kb on + strandat 3182.374 kb on - strandat 3182.410 kb on + strand, within RR42_RS34535at 3182.410 kb on + strand, within RR42_RS34535at 3182.599 kb on + strand, within RR42_RS34535at 3182.726 kb on - strandat 3182.800 kb on + strandat 3182.825 kb on + strandat 3182.922 kb on - strandat 3182.946 kb on - strandat 3183.068 kb on - strandat 3183.072 kb on - strandat 3183.081 kb on - strandat 3183.081 kb on - strandat 3183.117 kb on + strandat 3183.268 kb on - strandat 3183.269 kb on + strandat 3183.269 kb on + strandat 3183.286 kb on + strandat 3183.331 kb on + strandat 3183.332 kb on - strandat 3183.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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3,180,810 + -0.0
3,180,889 + -0.7
3,180,890 - +0.2
3,180,890 - -0.3
3,180,950 - +0.6
3,181,083 + +0.3
3,181,091 + -0.5
3,181,099 + -1.6
3,181,099 + +0.9
3,181,100 - +0.6
3,181,100 - +0.5
3,181,100 - +0.3
3,181,100 - -0.2
3,181,108 - -0.5
3,181,124 - -1.7
3,181,583 + RR42_RS34530 0.36 -1.2
3,181,584 - RR42_RS34530 0.37 +0.8
3,181,584 - RR42_RS34530 0.37 +0.1
3,181,694 + RR42_RS34530 0.45 +1.0
3,181,694 + RR42_RS34530 0.45 +0.6
3,181,695 - RR42_RS34530 0.45 +1.5
3,181,695 - RR42_RS34530 0.45 +1.2
3,181,695 - RR42_RS34530 0.45 +1.7
3,181,757 + RR42_RS34530 0.50 +0.1
3,181,758 - RR42_RS34530 0.51 -1.1
3,181,763 + RR42_RS34530 0.51 +0.0
3,181,764 - RR42_RS34530 0.51 +0.6
3,181,764 - RR42_RS34530 0.51 -0.4
3,181,847 - RR42_RS34530 0.58 +0.7
3,182,247 + +0.1
3,182,248 - -1.0
3,182,248 - -1.5
3,182,373 + +0.4
3,182,374 - +0.5
3,182,410 + RR42_RS34535 0.15 -2.5
3,182,410 + RR42_RS34535 0.15 -0.4
3,182,599 + RR42_RS34535 0.88 -0.6
3,182,726 - +0.0
3,182,800 + +0.1
3,182,825 + +0.1
3,182,922 - -0.3
3,182,946 - +0.1
3,183,068 - +0.1
3,183,072 - -0.5
3,183,081 - +0.1
3,183,081 - -0.5
3,183,117 + -2.2
3,183,268 - -2.4
3,183,269 + -0.2
3,183,269 + -1.0
3,183,286 + +0.1
3,183,331 + +1.0
3,183,332 - -2.3
3,183,360 + -0.1

Or see this region's nucleotide sequence