Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34245

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
3,107,352	-		RR42_RS34235	0.43	-0.4
3,107,352	-		RR42_RS34235	0.43	-0.8
3,107,370	-		RR42_RS34235	0.45	+0.4
3,107,395	+		RR42_RS34235	0.48	+0.6
3,107,395	+		RR42_RS34235	0.48	+0.5
3,107,641	+		RR42_RS34235	0.72	+1.2
3,107,642	-		RR42_RS34235	0.73	+1.7
3,107,731	+		RR42_RS34235	0.82	-0.5
3,107,731	+		RR42_RS34235	0.82	+0.9
3,107,731	+		RR42_RS34235	0.82	+0.2
3,107,732	-		RR42_RS34235	0.82	+0.9
3,107,732	-		RR42_RS34235	0.82	-1.0
3,107,801	+		RR42_RS34235	0.89	+2.2
3,107,801	+		RR42_RS34235	0.89	+0.6
3,107,802	-		RR42_RS34235	0.89	+1.1
3,107,802	-		RR42_RS34235	0.89	+2.2
3,107,955	-		RR42_RS34240	0.14	-0.5
3,107,965	+		RR42_RS34240	0.17	-0.1
3,107,966	-		RR42_RS34240	0.17	-1.8
3,108,085	+		RR42_RS34240	0.55	-0.2
3,108,086	-		RR42_RS34240	0.55	-0.5
3,108,106	+		RR42_RS34240	0.61	-0.8
3,108,106	+		RR42_RS34240	0.61	-0.0
3,108,107	-		RR42_RS34240	0.62	+0.6
3,108,108	+		RR42_RS34240	0.62	-0.4
3,108,109	-		RR42_RS34240	0.62	+0.0
3,108,157	-		RR42_RS34240	0.77	-0.1
3,108,267	-				-0.6
3,108,393	-				+0.5
3,108,511	+				+0.4
3,108,512	-				+1.0
3,108,772	+		RR42_RS34245	0.13	+2.2
3,108,773	-		RR42_RS34245	0.13	+0.5
3,108,790	+		RR42_RS34245	0.13	+1.2
3,108,791	-		RR42_RS34245	0.13	-1.9
3,108,791	-		RR42_RS34245	0.13	-1.5
3,108,802	+		RR42_RS34245	0.14	+1.4
3,108,803	-		RR42_RS34245	0.14	-0.2
3,108,922	+		RR42_RS34245	0.17	+0.3
3,109,064	-		RR42_RS34245	0.21	+0.6
3,109,064	-		RR42_RS34245	0.21	+0.2
3,109,344	-		RR42_RS34245	0.29	-2.5
3,109,996	+		RR42_RS34245	0.47	-0.0
3,110,245	+		RR42_RS34245	0.54	+0.0
3,110,306	-		RR42_RS34245	0.56	-0.4
3,110,306	-		RR42_RS34245	0.56	+0.4
3,110,306	-		RR42_RS34245	0.56	+2.7
3,110,306	-		RR42_RS34245	0.56	+0.9
3,110,306	-		RR42_RS34245	0.56	+0.4
3,110,432	+		RR42_RS34245	0.59	+1.5
3,110,432	+		RR42_RS34245	0.59	+0.1
3,110,434	+		RR42_RS34245	0.59	-0.2
3,110,434	+		RR42_RS34245	0.59	+0.3
3,110,434	+		RR42_RS34245	0.59	+0.9
3,110,434	+		RR42_RS34245	0.59	+2.2
3,110,670	+		RR42_RS34245	0.66	+0.9
3,110,671	-		RR42_RS34245	0.66	+1.5
3,110,677	+		RR42_RS34245	0.66	-1.1
3,110,789	-		RR42_RS34245	0.69	+0.8
3,110,943	-		RR42_RS34245	0.74	+1.2
3,110,943	-		RR42_RS34245	0.74	+1.6
3,110,943	-		RR42_RS34245	0.74	-2.1
3,110,990	-		RR42_RS34245	0.75	+0.6
3,111,069	-		RR42_RS34245	0.77	+0.1
3,111,070	+		RR42_RS34245	0.77	+0.2
3,111,070	+		RR42_RS34245	0.77	-1.6
3,111,085	+		RR42_RS34245	0.78	+0.3
3,111,305	-		RR42_RS34245	0.84	-0.2
3,111,314	-		RR42_RS34245	0.84	-0.6
3,111,334	+		RR42_RS34245	0.85	-0.5
3,111,512	-		RR42_RS34245	0.90	-0.3
3,111,814	+				+0.3
3,111,814	+				+1.2
3,111,814	+				-1.5
3,111,814	+				+0.7
3,111,815	-				-0.2
3,111,815	-				-0.7
3,111,815	-				-0.8
3,111,920	+				+0.5
3,111,920	+				+0.1
3,111,921	-				-0.6
3,111,921	-				+1.2
3,111,921	-				-0.1
3,111,921	-				-0.9
3,111,994	+				-0.7
3,111,994	+				-0.6
3,111,994	+				+0.6
3,111,995	-				-0.3
3,111,995	-				+0.7
3,111,995	-				-0.1
3,112,051	+				+1.3
3,112,051	+				-0.6
3,112,052	-				+0.4
3,112,144	+		RR42_RS34250	0.12	+0.6
3,112,144	+		RR42_RS34250	0.12	+0.5
3,112,145	-		RR42_RS34250	0.12	-0.1
3,112,343	+		RR42_RS34250	0.34	+1.0
3,112,343	+		RR42_RS34250	0.34	+1.1
3,112,343	+		RR42_RS34250	0.34	-1.1
3,112,344	-		RR42_RS34250	0.34	-0.3
3,112,344	-		RR42_RS34250	0.34	-1.1
3,112,344	-		RR42_RS34250	0.34	+0.6
3,112,344	-		RR42_RS34250	0.34	-0.8
3,112,358	+		RR42_RS34250	0.35	-1.7
3,112,359	-		RR42_RS34250	0.36	-1.1
3,112,499	-		RR42_RS34250	0.51	+0.2
3,112,554	+		RR42_RS34250	0.57	+0.1
3,112,625	+		RR42_RS34250	0.65	-0.4
3,112,625	+		RR42_RS34250	0.65	+1.1
3,112,625	+		RR42_RS34250	0.65	-0.4
3,112,626	-		RR42_RS34250	0.65	+0.5
3,112,626	-		RR42_RS34250	0.65	-0.4
3,112,626	-		RR42_RS34250	0.65	+0.8
3,112,626	-		RR42_RS34250	0.65	-2.7
3,112,626	-		RR42_RS34250	0.65	-0.2
3,112,626	-		RR42_RS34250	0.65	-0.0
3,112,670	+		RR42_RS34250	0.70	+0.8
3,112,768	-		RR42_RS34250	0.81	+1.7
3,112,785	-		RR42_RS34250	0.83	+0.7