Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33875

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
3,027,144	+				+0.2
3,027,144	+				-1.9
3,027,144	+				+0.1
3,027,145	-				+0.3
3,027,145	-				-0.2
3,027,145	-				-2.2
3,027,145	-				-0.1
3,027,152	+				-0.1
3,027,153	-				-0.9
3,027,207	+				+0.4
3,027,208	-				-0.1
3,027,217	+				-0.5
3,027,217	+				-0.2
3,027,218	-				+0.3
3,027,218	-				+0.1
3,027,219	+				-2.3
3,027,220	-				-1.7
3,027,220	-				-1.2
3,027,453	+		RR42_RS33870	0.66	+0.6
3,027,453	+		RR42_RS33870	0.66	+1.4
3,027,454	-		RR42_RS33870	0.66	-0.4
3,027,476	-		RR42_RS33870	0.73	-0.5
3,027,476	-		RR42_RS33870	0.73	-0.7
3,027,565	+				+1.4
3,027,582	+				-0.4
3,027,582	+				+0.2
3,027,583	-				-2.5
3,027,583	-				+0.4
3,027,724	+				-2.9
3,027,734	+				-0.3
3,027,734	+				-0.2
3,027,734	+				-2.5
3,027,734	+				+1.1
3,027,734	+				-0.5
3,027,735	-				+0.6
3,027,739	+				-0.2
3,027,739	+				-3.2
3,027,739	+				+0.5
3,027,740	-				+0.5
3,027,891	+				+0.9
3,027,891	+				+0.1
3,027,892	-				-0.3
3,027,922	+				+0.8
3,027,923	-				-3.0
3,028,061	+				-0.1
3,028,062	-				+1.3
3,028,062	-				+0.4
3,028,062	-				+1.0
3,028,112	+				+1.3
3,028,112	+				-0.2
3,028,339	+		RR42_RS33875	0.26	-1.0
3,028,343	+		RR42_RS33875	0.27	+0.6
3,028,344	-		RR42_RS33875	0.27	-2.7
3,028,421	+		RR42_RS33875	0.32	-1.9
3,028,439	+		RR42_RS33875	0.34	+1.4
3,028,439	+		RR42_RS33875	0.34	+1.1
3,028,439	+		RR42_RS33875	0.34	-0.6
3,028,440	-		RR42_RS33875	0.34	+0.5
3,028,440	-		RR42_RS33875	0.34	+0.1
3,028,440	-		RR42_RS33875	0.34	-0.6
3,028,493	+		RR42_RS33875	0.38	+0.1
3,028,751	+		RR42_RS33875	0.58	-0.6
3,028,778	+		RR42_RS33875	0.60	-0.1
3,028,779	-		RR42_RS33875	0.60	-2.6
3,028,793	+		RR42_RS33875	0.61	+0.0
3,028,793	+		RR42_RS33875	0.61	+0.0
3,028,793	+		RR42_RS33875	0.61	-1.3
3,028,793	+		RR42_RS33875	0.61	-0.5
3,028,793	+		RR42_RS33875	0.61	+0.3
3,028,794	-		RR42_RS33875	0.61	+0.0
3,028,794	-		RR42_RS33875	0.61	+1.1
3,028,795	+		RR42_RS33875	0.61	+0.7
3,028,795	+		RR42_RS33875	0.61	-0.9
3,028,874	+		RR42_RS33875	0.67	-1.0
3,028,876	+		RR42_RS33875	0.67	-0.8
3,028,877	-		RR42_RS33875	0.67	+2.3
3,028,877	-		RR42_RS33875	0.67	+1.6
3,028,877	-		RR42_RS33875	0.67	-1.9
3,028,877	-		RR42_RS33875	0.67	-0.4
3,028,877	-		RR42_RS33875	0.67	-0.9
3,028,933	+		RR42_RS33875	0.72	-2.5
3,028,933	+		RR42_RS33875	0.72	-1.5
3,028,933	+		RR42_RS33875	0.72	-1.2
3,028,933	+		RR42_RS33875	0.72	+0.9
3,028,933	+		RR42_RS33875	0.72	-0.3
3,028,934	-		RR42_RS33875	0.72	-0.8
3,029,057	+		RR42_RS33875	0.81	+2.5
3,029,057	+		RR42_RS33875	0.81	+0.0
3,029,058	-		RR42_RS33875	0.81	-2.1
3,029,058	-		RR42_RS33875	0.81	+0.1
3,029,059	+		RR42_RS33875	0.81	+0.5
3,029,059	+		RR42_RS33875	0.81	+2.4
3,029,060	-		RR42_RS33875	0.81	+1.0
3,029,060	-		RR42_RS33875	0.81	-0.4
3,029,060	-		RR42_RS33875	0.81	+0.1
3,029,060	-		RR42_RS33875	0.81	+0.8
3,029,060	-		RR42_RS33875	0.81	+1.1
3,029,060	-		RR42_RS33875	0.81	+0.6
3,029,171	+		RR42_RS33875	0.90	-1.3
3,029,217	-				-0.5
3,029,217	-				-0.7
3,029,223	-				-0.9
3,029,223	-				-0.1
3,029,301	-				+0.9
3,029,301	-				+1.7
3,029,874	-		RR42_RS33880	0.57	+0.2
3,029,881	+		RR42_RS33880	0.58	+1.1
3,029,881	+		RR42_RS33880	0.58	-0.0
3,029,882	-		RR42_RS33880	0.58	-0.0
3,029,911	+		RR42_RS33880	0.61	-0.4
3,029,938	+		RR42_RS33880	0.64	+1.1
3,029,938	+		RR42_RS33880	0.64	-0.3
3,029,939	-		RR42_RS33880	0.64	-0.3
3,030,043	+		RR42_RS33880	0.75	+0.7
3,030,044	-		RR42_RS33880	0.75	+0.4
3,030,084	+		RR42_RS33880	0.79	-0.6
3,030,109	+		RR42_RS33880	0.82	-1.1
3,030,109	+		RR42_RS33880	0.82	-0.3
3,030,110	-		RR42_RS33880	0.82	-1.4
3,030,266	+				-1.1
3,030,266	+				-0.5
3,030,266	+				-0.6