Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29090

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
1,881,752	+		RR42_RS29085	0.41	+1.8
1,881,752	+		RR42_RS29085	0.41	+0.5
1,881,752	+		RR42_RS29085	0.41	+0.3
1,881,752	+		RR42_RS29085	0.41	-1.0
1,881,752	+		RR42_RS29085	0.41	+0.9
1,881,854	+		RR42_RS29085	0.48	-3.3
1,881,854	+		RR42_RS29085	0.48	+0.2
1,881,855	-		RR42_RS29085	0.49	-0.7
1,881,855	-		RR42_RS29085	0.49	-0.5
1,881,855	-		RR42_RS29085	0.49	-1.7
1,881,938	+		RR42_RS29085	0.55	+0.0
1,881,938	+		RR42_RS29085	0.55	+0.9
1,881,938	+		RR42_RS29085	0.55	+0.0
1,881,938	+		RR42_RS29085	0.55	+2.9
1,881,939	-		RR42_RS29085	0.55	-0.4
1,881,939	-		RR42_RS29085	0.55	+0.4
1,881,939	-		RR42_RS29085	0.55	+0.5
1,881,981	-		RR42_RS29085	0.58	+0.7
1,881,993	-		RR42_RS29085	0.59	+0.2
1,882,013	+		RR42_RS29085	0.60	+0.1
1,882,013	+		RR42_RS29085	0.60	-0.3
1,882,013	+		RR42_RS29085	0.60	+1.2
1,882,014	-		RR42_RS29085	0.60	-0.6
1,882,014	-		RR42_RS29085	0.60	-1.9
1,882,014	-		RR42_RS29085	0.60	-0.1
1,882,167	-		RR42_RS29085	0.72	+0.9
1,882,241	+		RR42_RS29085	0.77	-0.4
1,882,241	+		RR42_RS29085	0.77	-1.1
1,882,241	+		RR42_RS29085	0.77	+0.1
1,882,241	+		RR42_RS29085	0.77	-1.9
1,882,242	-		RR42_RS29085	0.77	-1.6
1,882,242	-		RR42_RS29085	0.77	+0.2
1,882,242	-		RR42_RS29085	0.77	+0.4
1,882,242	-		RR42_RS29085	0.77	-0.8
1,882,242	-		RR42_RS29085	0.77	+0.7
1,882,375	+		RR42_RS29085	0.87	-0.8
1,882,424	+				+0.7
1,882,424	+				+0.3
1,882,425	-				+0.1
1,882,425	-				-0.0
1,882,426	+				+0.4
1,882,426	+				+1.2
1,882,426	+				+0.4
1,882,426	+				-0.9
1,882,427	-				-1.5
1,882,427	-				+0.4
1,882,427	-				+0.3
1,882,427	-				+0.1
1,882,502	+				-0.4
1,882,502	+				-0.3
1,882,503	-				+1.6
1,882,653	+				+0.3
1,882,706	+				-0.8
1,882,707	-				-2.6
1,882,707	-				+1.1
1,882,707	-				-0.7
1,882,707	-				+0.3
1,882,868	+		RR42_RS29090	0.12	-2.7
1,882,868	+		RR42_RS29090	0.12	+0.3
1,882,869	-		RR42_RS29090	0.12	+0.8
1,883,015	+		RR42_RS29090	0.21	+1.3
1,883,017	+		RR42_RS29090	0.21	-0.7
1,883,017	+		RR42_RS29090	0.21	-0.7
1,883,017	+		RR42_RS29090	0.21	+0.3
1,883,017	+		RR42_RS29090	0.21	+0.3
1,883,018	-		RR42_RS29090	0.21	-1.1
1,883,154	-		RR42_RS29090	0.30	-1.6
1,883,192	+		RR42_RS29090	0.33	-1.1
1,883,193	-		RR42_RS29090	0.33	+0.6
1,883,443	+		RR42_RS29090	0.49	-0.9
1,883,444	-		RR42_RS29090	0.49	-0.1
1,883,708	+		RR42_RS29090	0.66	+1.9
1,883,914	+		RR42_RS29090	0.80	-0.5
1,883,984	+		RR42_RS29090	0.84	-0.0
1,883,985	-		RR42_RS29090	0.84	+0.1
1,884,025	+		RR42_RS29090	0.87	-0.2
1,884,178	+				-0.6
1,884,178	+				+0.5
1,884,178	+				+1.0
1,884,178	+				-1.5
1,884,178	+				-0.9
1,884,178	+				+0.4
1,884,179	-				+1.4
1,884,179	-				-0.0
1,884,179	-				+0.1
1,884,179	-				+0.3
1,884,304	-				-1.5
1,884,410	+				-0.4
1,884,411	-				-1.1
1,884,457	-				-0.9
1,884,544	-		RR42_RS29095	0.11	-0.3
1,884,544	-		RR42_RS29095	0.11	+0.2
1,884,544	-		RR42_RS29095	0.11	-0.7
1,884,656	-		RR42_RS29095	0.43	-0.1
1,884,707	-		RR42_RS29095	0.58	-1.3
1,884,718	-		RR42_RS29095	0.61	-1.9
1,884,718	-		RR42_RS29095	0.61	-2.0
1,884,989	-				-1.2
1,885,190	-		RR42_RS29100	0.25	+0.3