Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28340 and RR42_RS28345 are separated by 25 nucleotides RR42_RS28345 and RR42_RS28350 are separated by 38 nucleotides
RR42_RS28340: RR42_RS28340 - phthalate 4,5-dioxygenase, at 1,718,835 to 1,720,118
_RS28340
RR42_RS28345: RR42_RS28345 - ABC transporter substrate-binding protein, at 1,720,144 to 1,721,127
_RS28345
RR42_RS28350: RR42_RS28350 - phthalate 4,5-dioxygenase, at 1,721,166 to 1,722,404
_RS28350
Position (kb) 1720
1721
1722 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1719.467 kb on - strand, within RR42_RS28340 at 1719.467 kb on - strand, within RR42_RS28340 at 1719.710 kb on + strand, within RR42_RS28340 at 1719.710 kb on + strand, within RR42_RS28340 at 1719.710 kb on + strand, within RR42_RS28340 at 1719.711 kb on + strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.712 kb on + strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.720 kb on + strand, within RR42_RS28340 at 1719.839 kb on - strand, within RR42_RS28340 at 1719.854 kb on - strand, within RR42_RS28340 at 1719.857 kb on + strand, within RR42_RS28340 at 1719.937 kb on + strand, within RR42_RS28340 at 1719.937 kb on + strand, within RR42_RS28340 at 1719.938 kb on - strand, within RR42_RS28340 at 1719.958 kb on + strand, within RR42_RS28340 at 1719.959 kb on - strand, within RR42_RS28340 at 1720.112 kb on + strand at 1720.136 kb on + strand at 1720.145 kb on + strand at 1720.568 kb on + strand, within RR42_RS28345 at 1720.568 kb on + strand, within RR42_RS28345 at 1720.569 kb on - strand, within RR42_RS28345 at 1720.719 kb on + strand, within RR42_RS28345 at 1720.719 kb on + strand, within RR42_RS28345 at 1720.857 kb on - strand at 1720.857 kb on - strand, within RR42_RS28345 at 1720.857 kb on - strand, within RR42_RS28345 at 1721.058 kb on - strand at 1721.117 kb on + strand at 1721.139 kb on + strand at 1721.546 kb on + strand, within RR42_RS28350 at 1721.665 kb on + strand, within RR42_RS28350 at 1721.698 kb on + strand, within RR42_RS28350 at 1721.746 kb on + strand, within RR42_RS28350 at 1721.747 kb on - strand, within RR42_RS28350
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 1,719,467 - RR42_RS28340 0.49 +0.3 1,719,467 - RR42_RS28340 0.49 -0.7 1,719,710 + RR42_RS28340 0.68 -0.2 1,719,710 + RR42_RS28340 0.68 -2.8 1,719,710 + RR42_RS28340 0.68 +0.6 1,719,711 + RR42_RS28340 0.68 -0.5 1,719,711 - RR42_RS28340 0.68 -0.7 1,719,711 - RR42_RS28340 0.68 -1.2 1,719,711 - RR42_RS28340 0.68 -0.1 1,719,711 - RR42_RS28340 0.68 -1.1 1,719,712 + RR42_RS28340 0.68 +0.3 1,719,713 - RR42_RS28340 0.68 -1.7 1,719,713 - RR42_RS28340 0.68 -0.3 1,719,713 - RR42_RS28340 0.68 -1.1 1,719,713 - RR42_RS28340 0.68 +0.7 1,719,720 + RR42_RS28340 0.69 -0.1 1,719,839 - RR42_RS28340 0.78 +0.9 1,719,854 - RR42_RS28340 0.79 +0.4 1,719,857 + RR42_RS28340 0.80 +1.1 1,719,937 + RR42_RS28340 0.86 -1.0 1,719,937 + RR42_RS28340 0.86 -1.1 1,719,938 - RR42_RS28340 0.86 +0.2 1,719,958 + RR42_RS28340 0.87 -0.9 1,719,959 - RR42_RS28340 0.88 -0.5 1,720,112 + +0.9 1,720,136 + +1.2 1,720,145 + -2.0 1,720,568 + RR42_RS28345 0.43 +0.4 1,720,568 + RR42_RS28345 0.43 +0.5 1,720,569 - RR42_RS28345 0.43 -2.4 1,720,719 + RR42_RS28345 0.58 +0.9 1,720,719 + RR42_RS28345 0.58 +0.8 1,720,857 - +0.9 1,720,857 - RR42_RS28345 0.72 -1.1 1,720,857 - RR42_RS28345 0.72 +0.1 1,721,058 - -0.1 1,721,117 + -1.1 1,721,139 + +1.1 1,721,546 + RR42_RS28350 0.31 +0.3 1,721,665 + RR42_RS28350 0.40 -2.0 1,721,698 + RR42_RS28350 0.43 -0.5 1,721,746 + RR42_RS28350 0.47 +1.4 1,721,747 - RR42_RS28350 0.47 +0.7
Or see this region's nucleotide sequence