Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27125

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27115 and RR42_RS27120 overlap by 20 nucleotidesRR42_RS27120 and RR42_RS27125 overlap by 4 nucleotidesRR42_RS27125 and RR42_RS27130 are separated by 161 nucleotides RR42_RS27115: RR42_RS27115 - amino acid ABC transporter ATP-binding protein, at 1,435,985 to 1,436,713 _RS27115 RR42_RS27120: RR42_RS27120 - amino acid ABC transporter permease, at 1,436,694 to 1,437,350 _RS27120 RR42_RS27125: RR42_RS27125 - polar amino acid ABC transporter permease, at 1,437,347 to 1,438,012 _RS27125 RR42_RS27130: RR42_RS27130 - amino acid ABC transporter substrate-binding protein, at 1,438,174 to 1,438,956 _RS27130 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1 2at 1436.536 kb on + strand, within RR42_RS27115at 1436.569 kb on + strand, within RR42_RS27115at 1436.954 kb on - strand, within RR42_RS27120at 1437.420 kb on + strand, within RR42_RS27125at 1437.420 kb on + strand, within RR42_RS27125at 1437.420 kb on + strand, within RR42_RS27125at 1437.421 kb on - strand, within RR42_RS27125at 1437.834 kb on + strand, within RR42_RS27125at 1437.835 kb on - strand, within RR42_RS27125at 1438.005 kb on + strandat 1438.005 kb on + strandat 1438.073 kb on - strandat 1438.073 kb on - strandat 1438.172 kb on + strandat 1438.454 kb on + strand, within RR42_RS27130at 1438.454 kb on + strand, within RR42_RS27130at 1438.593 kb on + strand, within RR42_RS27130at 1438.595 kb on + strand, within RR42_RS27130at 1438.608 kb on - strand, within RR42_RS27130at 1438.608 kb on - strand, within RR42_RS27130at 1438.694 kb on + strand, within RR42_RS27130at 1438.957 kb on - strandat 1438.957 kb on - strandat 1438.969 kb on + strandat 1438.969 kb on + strandat 1438.970 kb on - strandat 1438.970 kb on - strandat 1439.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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1,436,536 + RR42_RS27115 0.76 +0.0
1,436,569 + RR42_RS27115 0.80 +0.1
1,436,954 - RR42_RS27120 0.40 -2.1
1,437,420 + RR42_RS27125 0.11 +2.5
1,437,420 + RR42_RS27125 0.11 -0.8
1,437,420 + RR42_RS27125 0.11 -1.9
1,437,421 - RR42_RS27125 0.11 +2.0
1,437,834 + RR42_RS27125 0.73 -0.3
1,437,835 - RR42_RS27125 0.73 -0.1
1,438,005 + +1.2
1,438,005 + -0.5
1,438,073 - -0.0
1,438,073 - -1.7
1,438,172 + -0.9
1,438,454 + RR42_RS27130 0.36 -1.9
1,438,454 + RR42_RS27130 0.36 -0.6
1,438,593 + RR42_RS27130 0.54 -1.6
1,438,595 + RR42_RS27130 0.54 +0.8
1,438,608 - RR42_RS27130 0.55 -0.6
1,438,608 - RR42_RS27130 0.55 -0.5
1,438,694 + RR42_RS27130 0.66 +0.4
1,438,957 - +0.4
1,438,957 - +0.9
1,438,969 + -0.5
1,438,969 + +0.8
1,438,970 - +0.9
1,438,970 - +0.6
1,439,007 - +0.6

Or see this region's nucleotide sequence