Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26595

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
1,319,966	+		RR42_RS26585	0.85	-0.1
1,319,967	-		RR42_RS26585	0.85	-1.3
1,320,036	+		RR42_RS26585	0.88	+0.3
1,320,068	+		RR42_RS26585	0.89	-1.0
1,320,068	+		RR42_RS26585	0.89	-1.0
1,320,069	-		RR42_RS26585	0.90	-0.9
1,320,253	+				-2.6
1,320,284	-				+0.8
1,320,359	+				+0.1
1,320,377	-				-2.5
1,320,536	+		RR42_RS26590	0.47	-0.8
1,320,736	+				-2.6
1,320,737	-				+0.6
1,320,737	-				+0.8
1,320,865	-				-0.2
1,320,948	+				+0.2
1,320,948	+				+0.7
1,320,948	+				+0.7
1,320,949	-				+0.5
1,320,949	-				-0.5
1,321,004	+				-0.8
1,321,004	+				+0.3
1,321,004	+				+0.7
1,321,005	-				+0.3
1,321,005	-				-1.6
1,321,005	-				+1.5
1,321,085	+		RR42_RS26595	0.15	-0.2
1,321,174	-		RR42_RS26595	0.22	-0.8
1,321,195	-		RR42_RS26595	0.23	-0.2
1,321,195	-		RR42_RS26595	0.23	-0.2
1,321,207	-		RR42_RS26595	0.24	-0.2
1,321,207	-		RR42_RS26595	0.24	+1.6
1,321,207	-		RR42_RS26595	0.24	-0.3
1,321,242	+		RR42_RS26595	0.27	+0.1
1,321,267	-		RR42_RS26595	0.28	+1.4
1,321,281	-		RR42_RS26595	0.29	+3.0
1,321,294	+		RR42_RS26595	0.30	-0.8
1,321,294	+		RR42_RS26595	0.30	-0.2
1,321,295	-		RR42_RS26595	0.30	-0.2
1,321,295	-		RR42_RS26595	0.30	+0.7
1,321,295	-		RR42_RS26595	0.30	+1.4
1,321,304	+		RR42_RS26595	0.31	+0.2
1,321,304	+		RR42_RS26595	0.31	-1.3
1,321,305	-		RR42_RS26595	0.31	-0.9
1,321,305	-		RR42_RS26595	0.31	-0.7
1,321,380	+		RR42_RS26595	0.37	-2.2
1,321,380	+		RR42_RS26595	0.37	-0.5
1,321,380	+		RR42_RS26595	0.37	+0.3
1,321,381	-		RR42_RS26595	0.37	-0.4
1,321,427	-		RR42_RS26595	0.40	-0.5
1,321,497	+		RR42_RS26595	0.45	+0.7
1,321,497	+		RR42_RS26595	0.45	-0.0
1,321,582	+		RR42_RS26595	0.51	+0.3
1,321,583	-		RR42_RS26595	0.51	-1.0
1,321,602	+		RR42_RS26595	0.53	-0.0
1,321,602	+		RR42_RS26595	0.53	+0.2
1,321,602	+		RR42_RS26595	0.53	+0.8
1,321,603	-		RR42_RS26595	0.53	+1.3
1,321,603	-		RR42_RS26595	0.53	-0.2
1,321,603	-		RR42_RS26595	0.53	-0.4
1,321,746	+		RR42_RS26595	0.63	-1.5
1,321,746	+		RR42_RS26595	0.63	-0.1
1,321,747	-		RR42_RS26595	0.63	-1.6
1,321,747	-		RR42_RS26595	0.63	+1.0
1,321,747	-		RR42_RS26595	0.63	-0.6
1,321,747	-		RR42_RS26595	0.63	+2.6
1,321,750	+		RR42_RS26595	0.63	+0.9
1,321,750	+		RR42_RS26595	0.63	-1.2
1,321,750	+		RR42_RS26595	0.63	-2.5
1,321,750	+		RR42_RS26595	0.63	+0.2
1,321,751	-		RR42_RS26595	0.63	+0.7
1,321,751	-		RR42_RS26595	0.63	-0.2
1,321,751	-		RR42_RS26595	0.63	-0.4
1,321,818	+		RR42_RS26595	0.68	+0.6
1,321,818	+		RR42_RS26595	0.68	+0.8
1,321,818	+		RR42_RS26595	0.68	-1.0
1,321,818	+		RR42_RS26595	0.68	-0.5
1,321,819	-		RR42_RS26595	0.68	+0.6
1,321,819	-		RR42_RS26595	0.68	+0.3
1,321,819	-		RR42_RS26595	0.68	-0.3
1,321,893	+		RR42_RS26595	0.74	-1.3
1,321,894	-		RR42_RS26595	0.74	-0.7
1,321,894	-		RR42_RS26595	0.74	+1.0
1,321,914	+		RR42_RS26595	0.75	+0.8
1,321,914	+		RR42_RS26595	0.75	-0.4
1,321,914	+		RR42_RS26595	0.75	+0.4
1,321,915	-		RR42_RS26595	0.75	-0.1
1,321,977	+		RR42_RS26595	0.80	-0.1
1,321,977	+		RR42_RS26595	0.80	-2.6
1,321,978	-		RR42_RS26595	0.80	-1.8
1,321,978	-		RR42_RS26595	0.80	+0.4
1,321,978	-		RR42_RS26595	0.80	-0.3
1,321,978	-		RR42_RS26595	0.80	+1.0
1,321,978	-		RR42_RS26595	0.80	-0.2
1,321,978	-		RR42_RS26595	0.80	+0.7
1,321,987	+		RR42_RS26595	0.81	+1.0
1,322,079	+		RR42_RS26595	0.87	-1.3
1,322,080	-		RR42_RS26595	0.87	-0.6
1,322,138	+				+0.3
1,322,234	+				-0.5
1,322,420	-				+0.5
1,322,423	-				-0.3
1,322,429	+				-3.2
1,322,465	+				-0.2
1,322,465	+				-1.1
1,322,466	-				-0.9
1,322,466	-				-1.0
1,322,753	+				-0.5
1,322,753	+				-2.0
1,322,832	-				+0.6
1,322,832	-				+0.8
1,322,832	-				-2.7
1,322,832	-				-0.1
1,323,087	+		RR42_RS26600	0.35	-1.0
1,323,087	+		RR42_RS26600	0.35	+0.2
1,323,140	-		RR42_RS26600	0.47	-0.4
1,323,193	+		RR42_RS26600	0.58	+0.6
1,323,193	+		RR42_RS26600	0.58	-2.4
1,323,209	-		RR42_RS26600	0.62	-0.4
1,323,209	-		RR42_RS26600	0.62	-1.3
1,323,229	-		RR42_RS26600	0.66	-0.2
1,323,229	-		RR42_RS26600	0.66	+0.4
1,323,250	+		RR42_RS26600	0.71	+0.6
1,323,250	+		RR42_RS26600	0.71	-0.8
1,323,250	+		RR42_RS26600	0.71	-0.0
1,323,250	+		RR42_RS26600	0.71	+1.7
1,323,251	-		RR42_RS26600	0.71	-0.0