Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25775 and RR42_RS25780 are separated by 81 nucleotides RR42_RS25780 and RR42_RS25785 are separated by 373 nucleotides
RR42_RS25775: RR42_RS25775 - alcohol dehydrogenase, at 1,121,777 to 1,122,883
_RS25775
RR42_RS25780: RR42_RS25780 - taurine dioxygenase, at 1,122,965 to 1,123,780
_RS25780
RR42_RS25785: RR42_RS25785 - TetR family transcriptional regulator, at 1,124,154 to 1,124,855
_RS25785
Position (kb)
1122
1123
1124 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1122.891 kb on - strand at 1123.024 kb on - strand at 1123.024 kb on - strand at 1123.024 kb on - strand at 1123.115 kb on - strand, within RR42_RS25780 at 1123.171 kb on + strand, within RR42_RS25780 at 1123.171 kb on + strand, within RR42_RS25780 at 1123.171 kb on + strand, within RR42_RS25780 at 1123.172 kb on - strand, within RR42_RS25780 at 1123.172 kb on - strand, within RR42_RS25780 at 1123.172 kb on - strand, within RR42_RS25780 at 1123.172 kb on - strand, within RR42_RS25780 at 1123.174 kb on - strand, within RR42_RS25780 at 1123.174 kb on - strand, within RR42_RS25780 at 1123.249 kb on - strand, within RR42_RS25780 at 1123.249 kb on - strand, within RR42_RS25780 at 1123.269 kb on + strand, within RR42_RS25780 at 1123.269 kb on + strand, within RR42_RS25780 at 1123.269 kb on + strand, within RR42_RS25780 at 1123.269 kb on + strand, within RR42_RS25780 at 1123.269 kb on + strand, within RR42_RS25780 at 1123.270 kb on - strand, within RR42_RS25780 at 1123.270 kb on - strand, within RR42_RS25780 at 1123.270 kb on - strand, within RR42_RS25780 at 1123.270 kb on - strand, within RR42_RS25780 at 1123.357 kb on - strand, within RR42_RS25780 at 1123.446 kb on + strand, within RR42_RS25780 at 1123.545 kb on + strand, within RR42_RS25780 at 1123.546 kb on - strand, within RR42_RS25780 at 1123.780 kb on + strand at 1123.781 kb on - strand at 1123.781 kb on - strand at 1123.803 kb on + strand at 1123.804 kb on - strand at 1123.821 kb on + strand at 1123.822 kb on - strand at 1123.822 kb on - strand at 1123.994 kb on + strand at 1123.996 kb on - strand at 1124.024 kb on + strand at 1124.024 kb on + strand at 1124.141 kb on + strand at 1124.156 kb on - strand at 1124.229 kb on + strand, within RR42_RS25785 at 1124.455 kb on + strand, within RR42_RS25785 at 1124.559 kb on - strand, within RR42_RS25785
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 1,122,891 - -0.3 1,123,024 - -2.6 1,123,024 - -0.7 1,123,024 - -1.3 1,123,115 - RR42_RS25780 0.18 +1.7 1,123,171 + RR42_RS25780 0.25 +0.1 1,123,171 + RR42_RS25780 0.25 +0.5 1,123,171 + RR42_RS25780 0.25 -0.7 1,123,172 - RR42_RS25780 0.25 +0.3 1,123,172 - RR42_RS25780 0.25 +0.6 1,123,172 - RR42_RS25780 0.25 +0.6 1,123,172 - RR42_RS25780 0.25 +1.2 1,123,174 - RR42_RS25780 0.26 -0.5 1,123,174 - RR42_RS25780 0.26 -2.4 1,123,249 - RR42_RS25780 0.35 -0.5 1,123,249 - RR42_RS25780 0.35 -1.9 1,123,269 + RR42_RS25780 0.37 -0.7 1,123,269 + RR42_RS25780 0.37 -0.8 1,123,269 + RR42_RS25780 0.37 -0.2 1,123,269 + RR42_RS25780 0.37 +0.1 1,123,269 + RR42_RS25780 0.37 +0.7 1,123,270 - RR42_RS25780 0.37 -0.5 1,123,270 - RR42_RS25780 0.37 -0.4 1,123,270 - RR42_RS25780 0.37 -0.2 1,123,270 - RR42_RS25780 0.37 -1.7 1,123,357 - RR42_RS25780 0.48 -2.5 1,123,446 + RR42_RS25780 0.59 -1.7 1,123,545 + RR42_RS25780 0.71 -2.4 1,123,546 - RR42_RS25780 0.71 +0.3 1,123,780 + +0.9 1,123,781 - +0.1 1,123,781 - +0.5 1,123,803 + -1.3 1,123,804 - -1.3 1,123,821 + -2.6 1,123,822 - +0.4 1,123,822 - +0.3 1,123,994 + -0.6 1,123,996 - -1.0 1,124,024 + +0.7 1,124,024 + +0.5 1,124,141 + +0.3 1,124,156 - -0.3 1,124,229 + RR42_RS25785 0.11 -3.4 1,124,455 + RR42_RS25785 0.43 -1.5 1,124,559 - RR42_RS25785 0.58 -3.3
Or see this region's nucleotide sequence