Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25710 and RR42_RS25715 are separated by 217 nucleotides RR42_RS25715 and RR42_RS25720 are separated by 291 nucleotides RR42_RS25720 and RR42_RS25725 are separated by 21 nucleotides RR42_RS25725 and RR42_RS25730 are separated by 43 nucleotides
RR42_RS25710: RR42_RS25710 - Clp protease, at 1,110,612 to 1,110,956
_RS25710
RR42_RS25715: RR42_RS25715 - hypothetical protein, at 1,111,174 to 1,111,404
_RS25715
RR42_RS25720: RR42_RS25720 - hypothetical protein, at 1,111,696 to 1,112,091
_RS25720
RR42_RS25725: RR42_RS25725 - hypothetical protein, at 1,112,113 to 1,112,778
_RS25725
RR42_RS25730: RR42_RS25730 - hypothetical protein, at 1,112,822 to 1,113,469
_RS25730
Position (kb) 1111
1112
1113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1110.714 kb on + strand, within RR42_RS25710 at 1110.714 kb on + strand, within RR42_RS25710 at 1110.714 kb on + strand, within RR42_RS25710 at 1110.714 kb on + strand, within RR42_RS25710 at 1110.715 kb on - strand at 1110.740 kb on + strand, within RR42_RS25710 at 1110.794 kb on + strand, within RR42_RS25710 at 1110.794 kb on + strand, within RR42_RS25710 at 1111.261 kb on - strand at 1111.261 kb on - strand, within RR42_RS25715 at 1111.330 kb on + strand, within RR42_RS25715 at 1111.330 kb on + strand, within RR42_RS25715 at 1111.331 kb on - strand, within RR42_RS25715 at 1111.331 kb on - strand, within RR42_RS25715 at 1111.348 kb on + strand, within RR42_RS25715 at 1111.433 kb on - strand at 1111.436 kb on - strand at 1111.506 kb on + strand at 1111.506 kb on + strand at 1111.526 kb on - strand at 1111.526 kb on - strand at 1111.555 kb on - strand at 1111.555 kb on - strand at 1111.555 kb on - strand at 1111.669 kb on + strand at 1111.669 kb on + strand at 1111.669 kb on + strand at 1111.669 kb on + strand at 1111.669 kb on + strand at 1111.823 kb on - strand, within RR42_RS25720 at 1111.823 kb on - strand, within RR42_RS25720 at 1111.961 kb on - strand, within RR42_RS25720 at 1111.961 kb on - strand, within RR42_RS25720 at 1111.961 kb on - strand, within RR42_RS25720 at 1111.997 kb on - strand, within RR42_RS25720 at 1111.997 kb on - strand, within RR42_RS25720 at 1112.059 kb on - strand at 1112.225 kb on + strand, within RR42_RS25725 at 1112.225 kb on + strand, within RR42_RS25725 at 1112.246 kb on + strand, within RR42_RS25725 at 1112.247 kb on - strand, within RR42_RS25725 at 1112.348 kb on - strand, within RR42_RS25725 at 1112.489 kb on + strand, within RR42_RS25725 at 1112.490 kb on - strand, within RR42_RS25725 at 1112.611 kb on + strand, within RR42_RS25725 at 1112.612 kb on - strand, within RR42_RS25725 at 1112.823 kb on + strand at 1112.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 1,110,714 + RR42_RS25710 0.30 +0.2 1,110,714 + RR42_RS25710 0.30 -0.0 1,110,714 + RR42_RS25710 0.30 -2.5 1,110,714 + RR42_RS25710 0.30 -0.8 1,110,715 - -1.5 1,110,740 + RR42_RS25710 0.37 +0.2 1,110,794 + RR42_RS25710 0.53 +0.2 1,110,794 + RR42_RS25710 0.53 -0.4 1,111,261 - +2.1 1,111,261 - RR42_RS25715 0.38 +0.6 1,111,330 + RR42_RS25715 0.68 +0.7 1,111,330 + RR42_RS25715 0.68 -1.7 1,111,331 - RR42_RS25715 0.68 +0.0 1,111,331 - RR42_RS25715 0.68 +0.1 1,111,348 + RR42_RS25715 0.75 +0.4 1,111,433 - -1.6 1,111,436 - -0.6 1,111,506 + -0.4 1,111,506 + +0.2 1,111,526 - -0.5 1,111,526 - -0.2 1,111,555 - +0.2 1,111,555 - +1.5 1,111,555 - -2.7 1,111,669 + -1.0 1,111,669 + +1.7 1,111,669 + -1.9 1,111,669 + -0.2 1,111,669 + +0.2 1,111,823 - RR42_RS25720 0.32 +0.5 1,111,823 - RR42_RS25720 0.32 -0.6 1,111,961 - RR42_RS25720 0.67 +0.1 1,111,961 - RR42_RS25720 0.67 -1.3 1,111,961 - RR42_RS25720 0.67 -2.1 1,111,997 - RR42_RS25720 0.76 -1.5 1,111,997 - RR42_RS25720 0.76 +0.3 1,112,059 - +1.1 1,112,225 + RR42_RS25725 0.17 -0.1 1,112,225 + RR42_RS25725 0.17 -0.8 1,112,246 + RR42_RS25725 0.20 +0.4 1,112,247 - RR42_RS25725 0.20 -0.5 1,112,348 - RR42_RS25725 0.35 +0.0 1,112,489 + RR42_RS25725 0.56 +0.5 1,112,490 - RR42_RS25725 0.57 +0.3 1,112,611 + RR42_RS25725 0.75 -0.3 1,112,612 - RR42_RS25725 0.75 +1.1 1,112,823 + -3.2 1,112,823 + -1.8
Or see this region's nucleotide sequence