Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24840

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24835 and RR42_RS24840 are separated by 70 nucleotidesRR42_RS24840 and RR42_RS24845 are separated by 51 nucleotides RR42_RS24835: RR42_RS24835 - carnitine dehydratase, at 909,048 to 910,385 _RS24835 RR42_RS24840: RR42_RS24840 - aldehyde dehydrogenase, at 910,456 to 911,916 _RS24840 RR42_RS24845: RR42_RS24845 - iditol 2-dehydrogenase, at 911,968 to 913,023 _RS24845 Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1at 909.589 kb on + strand, within RR42_RS24835at 909.590 kb on - strand, within RR42_RS24835at 909.590 kb on - strand, within RR42_RS24835at 909.679 kb on + strand, within RR42_RS24835at 909.680 kb on - strand, within RR42_RS24835at 909.748 kb on + strand, within RR42_RS24835at 909.749 kb on - strand, within RR42_RS24835at 909.749 kb on - strand, within RR42_RS24835at 909.782 kb on - strand, within RR42_RS24835at 909.836 kb on - strand, within RR42_RS24835at 909.884 kb on - strand, within RR42_RS24835at 909.884 kb on - strand, within RR42_RS24835at 909.919 kb on + strand, within RR42_RS24835at 909.920 kb on - strand, within RR42_RS24835at 911.105 kb on + strand, within RR42_RS24840at 911.412 kb on - strand, within RR42_RS24840at 911.475 kb on - strand, within RR42_RS24840at 911.483 kb on + strand, within RR42_RS24840at 911.549 kb on + strand, within RR42_RS24840at 911.845 kb on - strandat 911.873 kb on + strandat 912.055 kb on - strandat 912.241 kb on + strand, within RR42_RS24845at 912.729 kb on - strand, within RR42_RS24845at 912.896 kb on + strand, within RR42_RS24845at 912.896 kb on + strand, within RR42_RS24845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
remove
909,589 + RR42_RS24835 0.40 -2.1
909,590 - RR42_RS24835 0.41 +0.1
909,590 - RR42_RS24835 0.41 -0.1
909,679 + RR42_RS24835 0.47 -0.8
909,680 - RR42_RS24835 0.47 +0.5
909,748 + RR42_RS24835 0.52 +0.4
909,749 - RR42_RS24835 0.52 -0.2
909,749 - RR42_RS24835 0.52 -0.9
909,782 - RR42_RS24835 0.55 -0.2
909,836 - RR42_RS24835 0.59 -1.7
909,884 - RR42_RS24835 0.62 +0.1
909,884 - RR42_RS24835 0.62 +0.7
909,919 + RR42_RS24835 0.65 +0.0
909,920 - RR42_RS24835 0.65 +0.7
911,105 + RR42_RS24840 0.44 +0.6
911,412 - RR42_RS24840 0.65 +0.7
911,475 - RR42_RS24840 0.70 -0.8
911,483 + RR42_RS24840 0.70 +0.5
911,549 + RR42_RS24840 0.75 -2.7
911,845 - -0.4
911,873 + -0.6
912,055 - -0.0
912,241 + RR42_RS24845 0.26 +0.0
912,729 - RR42_RS24845 0.72 +1.2
912,896 + RR42_RS24845 0.88 -1.0
912,896 + RR42_RS24845 0.88 -2.5

Or see this region's nucleotide sequence