Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24810

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24805 and RR42_RS24810 are separated by 13 nucleotidesRR42_RS24810 and RR42_RS24815 are separated by 59 nucleotides RR42_RS24805: RR42_RS24805 - thiolase, at 902,967 to 904,181 _RS24805 RR42_RS24810: RR42_RS24810 - hypothetical protein, at 904,195 to 904,602 _RS24810 RR42_RS24815: RR42_RS24815 - hypothetical protein, at 904,662 to 905,681 _RS24815 Position (kb) 904 905Strain fitness (log2 ratio) -2 -1 0 1at 903.405 kb on + strand, within RR42_RS24805at 903.439 kb on - strand, within RR42_RS24805at 903.632 kb on - strand, within RR42_RS24805at 903.679 kb on - strand, within RR42_RS24805at 903.714 kb on + strand, within RR42_RS24805at 903.715 kb on - strand, within RR42_RS24805at 903.715 kb on - strand, within RR42_RS24805at 903.943 kb on - strand, within RR42_RS24805at 904.285 kb on + strand, within RR42_RS24810at 904.286 kb on - strand, within RR42_RS24810at 904.454 kb on - strand, within RR42_RS24810at 904.487 kb on - strand, within RR42_RS24810at 904.638 kb on + strandat 904.648 kb on + strandat 904.649 kb on - strandat 904.703 kb on - strandat 905.067 kb on + strand, within RR42_RS24815at 905.067 kb on + strand, within RR42_RS24815at 905.067 kb on + strand, within RR42_RS24815at 905.238 kb on + strand, within RR42_RS24815at 905.442 kb on + strand, within RR42_RS24815

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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903,405 + RR42_RS24805 0.36 +1.0
903,439 - RR42_RS24805 0.39 -0.1
903,632 - RR42_RS24805 0.55 +0.6
903,679 - RR42_RS24805 0.59 +0.7
903,714 + RR42_RS24805 0.61 -1.7
903,715 - RR42_RS24805 0.62 -0.2
903,715 - RR42_RS24805 0.62 +0.4
903,943 - RR42_RS24805 0.80 +0.7
904,285 + RR42_RS24810 0.22 -1.1
904,286 - RR42_RS24810 0.22 -1.4
904,454 - RR42_RS24810 0.63 +0.9
904,487 - RR42_RS24810 0.72 -0.4
904,638 + -1.6
904,648 + +0.7
904,649 - +0.2
904,703 - -0.3
905,067 + RR42_RS24815 0.40 +0.6
905,067 + RR42_RS24815 0.40 +0.8
905,067 + RR42_RS24815 0.40 -2.2
905,238 + RR42_RS24815 0.56 -0.7
905,442 + RR42_RS24815 0.76 -1.5

Or see this region's nucleotide sequence