Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23805

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23800 and RR42_RS23805 are separated by 407 nucleotidesRR42_RS23805 and RR42_RS23810 are separated by 30 nucleotides RR42_RS23800: RR42_RS23800 - hypothetical protein, at 666,429 to 666,728 _RS23800 RR42_RS23805: RR42_RS23805 - hypothetical protein, at 667,136 to 669,109 _RS23805 RR42_RS23810: RR42_RS23810 - hypothetical protein, at 669,140 to 671,086 _RS23810 Position (kb) 667 668 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 666.151 kb on + strandat 666.152 kb on - strandat 666.152 kb on - strandat 666.169 kb on + strandat 666.177 kb on - strandat 666.208 kb on + strandat 666.282 kb on - strandat 666.282 kb on - strandat 666.282 kb on - strandat 666.282 kb on - strandat 666.340 kb on + strandat 666.340 kb on + strandat 666.340 kb on + strandat 666.360 kb on + strandat 666.361 kb on - strandat 666.376 kb on + strandat 666.377 kb on - strandat 666.436 kb on + strandat 666.437 kb on - strandat 666.459 kb on + strand, within RR42_RS23800at 666.459 kb on + strand, within RR42_RS23800at 666.460 kb on - strand, within RR42_RS23800at 666.460 kb on - strand, within RR42_RS23800at 666.491 kb on + strand, within RR42_RS23800at 666.524 kb on - strand, within RR42_RS23800at 666.524 kb on - strand, within RR42_RS23800at 666.524 kb on - strand, within RR42_RS23800at 666.528 kb on + strand, within RR42_RS23800at 666.529 kb on - strand, within RR42_RS23800at 666.529 kb on - strand, within RR42_RS23800at 666.529 kb on - strand, within RR42_RS23800at 666.577 kb on + strand, within RR42_RS23800at 666.577 kb on + strand, within RR42_RS23800at 666.577 kb on + strand, within RR42_RS23800at 666.578 kb on - strand, within RR42_RS23800at 666.592 kb on + strand, within RR42_RS23800at 666.593 kb on - strand, within RR42_RS23800at 666.685 kb on - strand, within RR42_RS23800at 666.706 kb on - strandat 666.706 kb on - strandat 666.878 kb on - strandat 666.901 kb on - strandat 666.962 kb on - strandat 666.962 kb on - strandat 666.970 kb on + strandat 666.971 kb on - strandat 667.000 kb on + strandat 667.000 kb on + strandat 667.001 kb on - strandat 667.041 kb on + strandat 667.041 kb on + strandat 667.042 kb on - strandat 667.042 kb on - strandat 667.042 kb on - strandat 667.051 kb on + strandat 667.051 kb on + strandat 667.051 kb on + strandat 667.052 kb on - strandat 667.052 kb on - strandat 667.052 kb on - strandat 667.057 kb on + strandat 667.057 kb on + strandat 667.057 kb on + strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.288 kb on - strandat 667.288 kb on - strandat 667.288 kb on - strandat 667.513 kb on + strand, within RR42_RS23805at 667.513 kb on + strand, within RR42_RS23805at 667.659 kb on - strand, within RR42_RS23805at 667.736 kb on - strand, within RR42_RS23805at 667.765 kb on - strand, within RR42_RS23805at 667.765 kb on - strand, within RR42_RS23805at 667.765 kb on - strand, within RR42_RS23805at 667.857 kb on + strand, within RR42_RS23805at 667.857 kb on + strand, within RR42_RS23805at 667.857 kb on + strand, within RR42_RS23805at 667.858 kb on - strand, within RR42_RS23805at 667.858 kb on - strand, within RR42_RS23805at 667.926 kb on + strand, within RR42_RS23805at 668.011 kb on - strand, within RR42_RS23805at 668.170 kb on - strand, within RR42_RS23805at 668.170 kb on - strand, within RR42_RS23805at 668.227 kb on - strand, within RR42_RS23805at 668.227 kb on - strand, within RR42_RS23805at 668.266 kb on - strand, within RR42_RS23805at 668.266 kb on - strand, within RR42_RS23805at 668.266 kb on - strand, within RR42_RS23805at 668.266 kb on - strand, within RR42_RS23805at 668.266 kb on - strand, within RR42_RS23805at 668.277 kb on + strand, within RR42_RS23805at 668.277 kb on + strand, within RR42_RS23805at 668.278 kb on - strand, within RR42_RS23805at 668.436 kb on + strand, within RR42_RS23805at 668.436 kb on + strand, within RR42_RS23805at 668.514 kb on + strand, within RR42_RS23805at 668.514 kb on + strand, within RR42_RS23805at 668.514 kb on + strand, within RR42_RS23805at 668.515 kb on - strand, within RR42_RS23805at 668.647 kb on + strand, within RR42_RS23805at 668.648 kb on - strand, within RR42_RS23805at 668.648 kb on - strand, within RR42_RS23805at 668.760 kb on + strand, within RR42_RS23805at 668.760 kb on + strand, within RR42_RS23805at 668.761 kb on - strand, within RR42_RS23805at 668.761 kb on - strand, within RR42_RS23805at 668.848 kb on + strand, within RR42_RS23805at 668.848 kb on + strand, within RR42_RS23805at 668.849 kb on - strand, within RR42_RS23805at 668.862 kb on - strand, within RR42_RS23805at 668.884 kb on - strand, within RR42_RS23805at 668.884 kb on - strand, within RR42_RS23805at 668.961 kb on + strandat 668.962 kb on - strandat 669.086 kb on + strandat 669.103 kb on - strandat 669.103 kb on - strandat 669.181 kb on - strandat 669.215 kb on - strandat 669.300 kb on + strandat 669.301 kb on - strandat 669.361 kb on - strand, within RR42_RS23810at 669.482 kb on + strand, within RR42_RS23810at 669.482 kb on + strand, within RR42_RS23810at 669.483 kb on - strand, within RR42_RS23810at 669.520 kb on + strand, within RR42_RS23810at 669.520 kb on + strand, within RR42_RS23810at 669.521 kb on - strand, within RR42_RS23810

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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666,151 + +0.3
666,152 - +1.0
666,152 - -0.2
666,169 + +0.1
666,177 - -0.4
666,208 + -0.3
666,282 - -2.0
666,282 - -0.5
666,282 - -2.8
666,282 - -0.5
666,340 + -2.8
666,340 + +0.2
666,340 + +2.2
666,360 + -1.0
666,361 - -2.1
666,376 + -0.3
666,377 - +0.2
666,436 + +0.4
666,437 - -0.4
666,459 + RR42_RS23800 0.10 -1.7
666,459 + RR42_RS23800 0.10 +0.7
666,460 - RR42_RS23800 0.10 -0.8
666,460 - RR42_RS23800 0.10 +0.1
666,491 + RR42_RS23800 0.21 -0.4
666,524 - RR42_RS23800 0.32 -0.2
666,524 - RR42_RS23800 0.32 +0.2
666,524 - RR42_RS23800 0.32 -0.7
666,528 + RR42_RS23800 0.33 -0.3
666,529 - RR42_RS23800 0.33 +0.7
666,529 - RR42_RS23800 0.33 +1.1
666,529 - RR42_RS23800 0.33 -1.1
666,577 + RR42_RS23800 0.49 -0.7
666,577 + RR42_RS23800 0.49 -1.6
666,577 + RR42_RS23800 0.49 +1.2
666,578 - RR42_RS23800 0.50 +0.6
666,592 + RR42_RS23800 0.54 +0.0
666,593 - RR42_RS23800 0.55 +0.9
666,685 - RR42_RS23800 0.85 -0.7
666,706 - -1.8
666,706 - -1.0
666,878 - +0.2
666,901 - +1.1
666,962 - +1.2
666,962 - +0.6
666,970 + +0.1
666,971 - +1.9
667,000 + -0.1
667,000 + +0.4
667,001 - -0.4
667,041 + +0.4
667,041 + -1.7
667,042 - -0.3
667,042 - +0.0
667,042 - -2.8
667,051 + -0.2
667,051 + -0.2
667,051 + -1.1
667,052 - +0.2
667,052 - -1.4
667,052 - -2.1
667,057 + -0.0
667,057 + -0.2
667,057 + -0.0
667,058 - -0.1
667,058 - -0.3
667,058 - -0.1
667,058 - -0.6
667,058 - +1.5
667,288 - -0.4
667,288 - -1.2
667,288 - -2.8
667,513 + RR42_RS23805 0.19 -1.3
667,513 + RR42_RS23805 0.19 -0.0
667,659 - RR42_RS23805 0.26 +0.2
667,736 - RR42_RS23805 0.30 +0.5
667,765 - RR42_RS23805 0.32 -0.9
667,765 - RR42_RS23805 0.32 -0.7
667,765 - RR42_RS23805 0.32 -0.3
667,857 + RR42_RS23805 0.37 -0.1
667,857 + RR42_RS23805 0.37 -0.4
667,857 + RR42_RS23805 0.37 -1.7
667,858 - RR42_RS23805 0.37 +0.6
667,858 - RR42_RS23805 0.37 +0.1
667,926 + RR42_RS23805 0.40 +1.2
668,011 - RR42_RS23805 0.44 +0.3
668,170 - RR42_RS23805 0.52 +0.8
668,170 - RR42_RS23805 0.52 -0.8
668,227 - RR42_RS23805 0.55 +0.4
668,227 - RR42_RS23805 0.55 +0.3
668,266 - RR42_RS23805 0.57 +1.6
668,266 - RR42_RS23805 0.57 -0.8
668,266 - RR42_RS23805 0.57 +2.2
668,266 - RR42_RS23805 0.57 -2.5
668,266 - RR42_RS23805 0.57 +0.2
668,277 + RR42_RS23805 0.58 -0.8
668,277 + RR42_RS23805 0.58 +1.0
668,278 - RR42_RS23805 0.58 -0.4
668,436 + RR42_RS23805 0.66 -0.1
668,436 + RR42_RS23805 0.66 -0.9
668,514 + RR42_RS23805 0.70 -0.1
668,514 + RR42_RS23805 0.70 +0.4
668,514 + RR42_RS23805 0.70 -0.7
668,515 - RR42_RS23805 0.70 -0.3
668,647 + RR42_RS23805 0.77 +0.8
668,648 - RR42_RS23805 0.77 +2.7
668,648 - RR42_RS23805 0.77 -0.4
668,760 + RR42_RS23805 0.82 +0.3
668,760 + RR42_RS23805 0.82 -1.5
668,761 - RR42_RS23805 0.82 -2.2
668,761 - RR42_RS23805 0.82 -0.1
668,848 + RR42_RS23805 0.87 -0.2
668,848 + RR42_RS23805 0.87 -1.5
668,849 - RR42_RS23805 0.87 +0.8
668,862 - RR42_RS23805 0.87 +0.9
668,884 - RR42_RS23805 0.89 +0.2
668,884 - RR42_RS23805 0.89 +0.4
668,961 + +0.1
668,962 - +0.7
669,086 + +0.8
669,103 - +0.4
669,103 - +0.2
669,181 - -0.7
669,215 - +0.2
669,300 + +0.3
669,301 - +1.1
669,361 - RR42_RS23810 0.11 -1.4
669,482 + RR42_RS23810 0.18 -0.3
669,482 + RR42_RS23810 0.18 -1.0
669,483 - RR42_RS23810 0.18 -0.2
669,520 + RR42_RS23810 0.20 -0.5
669,520 + RR42_RS23810 0.20 -0.1
669,521 - RR42_RS23810 0.20 -0.5

Or see this region's nucleotide sequence