Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23505 and RR42_RS23510 are separated by 196 nucleotides RR42_RS23510 and RR42_RS23515 are separated by 175 nucleotides
RR42_RS23505: RR42_RS23505 - catechol 1,2-dioxygenase, at 599,265 to 600,179
_RS23505
RR42_RS23510: RR42_RS23510 - LysR family transcriptional regulator, at 600,376 to 601,293
_RS23510
RR42_RS23515: RR42_RS23515 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 601,469 to 604,054
_RS23515
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1 at 599.603 kb on - strand, within RR42_RS23505 at 599.603 kb on - strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.705 kb on - strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 600.010 kb on + strand, within RR42_RS23505 at 600.206 kb on + strand at 600.206 kb on + strand at 600.207 kb on - strand at 600.207 kb on - strand at 600.260 kb on - strand at 600.276 kb on - strand at 600.310 kb on + strand at 600.311 kb on - strand at 600.363 kb on - strand at 600.392 kb on + strand at 600.392 kb on + strand at 600.393 kb on - strand at 600.398 kb on - strand at 600.454 kb on - strand at 600.679 kb on + strand, within RR42_RS23510 at 600.679 kb on + strand, within RR42_RS23510 at 600.679 kb on + strand, within RR42_RS23510 at 600.680 kb on - strand, within RR42_RS23510 at 600.680 kb on - strand, within RR42_RS23510 at 600.680 kb on - strand, within RR42_RS23510 at 600.979 kb on + strand, within RR42_RS23510 at 600.979 kb on + strand, within RR42_RS23510 at 600.979 kb on + strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 601.141 kb on + strand, within RR42_RS23510 at 601.240 kb on + strand at 601.249 kb on + strand at 601.249 kb on + strand at 601.250 kb on - strand at 601.250 kb on - strand at 601.380 kb on - strand at 601.385 kb on - strand at 601.414 kb on - strand at 601.495 kb on - strand at 601.668 kb on - strand at 601.758 kb on - strand, within RR42_RS23515 at 601.758 kb on - strand, within RR42_RS23515 at 602.172 kb on - strand, within RR42_RS23515
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 599,603 - RR42_RS23505 0.37 -0.2 599,603 - RR42_RS23505 0.37 -1.6 599,704 + RR42_RS23505 0.48 +0.1 599,704 + RR42_RS23505 0.48 +0.7 599,704 + RR42_RS23505 0.48 +0.5 599,705 - RR42_RS23505 0.48 -0.6 599,869 + RR42_RS23505 0.66 -0.1 599,869 + RR42_RS23505 0.66 -1.8 599,869 + RR42_RS23505 0.66 -0.1 599,870 - RR42_RS23505 0.66 +1.5 599,870 - RR42_RS23505 0.66 +0.2 599,870 - RR42_RS23505 0.66 -1.4 599,870 - RR42_RS23505 0.66 +1.2 599,870 - RR42_RS23505 0.66 -1.5 599,870 - RR42_RS23505 0.66 +0.4 599,870 - RR42_RS23505 0.66 +1.1 599,870 - RR42_RS23505 0.66 +1.0 600,010 + RR42_RS23505 0.81 -2.7 600,206 + -0.3 600,206 + +0.0 600,207 - +0.1 600,207 - +0.2 600,260 - -1.6 600,276 - +0.2 600,310 + +0.8 600,311 - -0.3 600,363 - -1.6 600,392 + +1.5 600,392 + -0.7 600,393 - -0.1 600,398 - +0.7 600,454 - -0.8 600,679 + RR42_RS23510 0.33 -1.1 600,679 + RR42_RS23510 0.33 -0.7 600,679 + RR42_RS23510 0.33 +0.5 600,680 - RR42_RS23510 0.33 -0.7 600,680 - RR42_RS23510 0.33 -0.9 600,680 - RR42_RS23510 0.33 +0.3 600,979 + RR42_RS23510 0.66 +0.6 600,979 + RR42_RS23510 0.66 -1.5 600,979 + RR42_RS23510 0.66 +0.2 600,980 - RR42_RS23510 0.66 -0.0 600,980 - RR42_RS23510 0.66 +0.3 600,980 - RR42_RS23510 0.66 +0.9 600,980 - RR42_RS23510 0.66 +0.7 601,141 + RR42_RS23510 0.83 -0.2 601,240 + +1.1 601,249 + -1.1 601,249 + -0.3 601,250 - +0.9 601,250 - -1.3 601,380 - +1.1 601,385 - +0.1 601,414 - +1.5 601,495 - +1.7 601,668 - -2.1 601,758 - RR42_RS23515 0.11 +0.2 601,758 - RR42_RS23515 0.11 -0.1 602,172 - RR42_RS23515 0.27 +1.0
Or see this region's nucleotide sequence