Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23500 and RR42_RS23505 are separated by 132 nucleotides RR42_RS23505 and RR42_RS23510 are separated by 196 nucleotides
RR42_RS23500: RR42_RS23500 - benzene 1,2-dioxygenase, at 597,744 to 599,132
_RS23500
RR42_RS23505: RR42_RS23505 - catechol 1,2-dioxygenase, at 599,265 to 600,179
_RS23505
RR42_RS23510: RR42_RS23510 - LysR family transcriptional regulator, at 600,376 to 601,293
_RS23510
Position (kb) 599
600
601 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 598.339 kb on + strand, within RR42_RS23500 at 598.425 kb on - strand, within RR42_RS23500 at 598.425 kb on - strand, within RR42_RS23500 at 598.438 kb on + strand, within RR42_RS23500 at 598.514 kb on + strand, within RR42_RS23500 at 598.516 kb on + strand, within RR42_RS23500 at 598.516 kb on + strand, within RR42_RS23500 at 598.517 kb on - strand, within RR42_RS23500 at 598.517 kb on - strand, within RR42_RS23500 at 598.795 kb on + strand, within RR42_RS23500 at 598.796 kb on - strand, within RR42_RS23500 at 598.796 kb on - strand, within RR42_RS23500 at 598.918 kb on + strand, within RR42_RS23500 at 598.919 kb on - strand, within RR42_RS23500 at 598.927 kb on + strand, within RR42_RS23500 at 598.927 kb on + strand, within RR42_RS23500 at 598.928 kb on - strand, within RR42_RS23500 at 598.931 kb on - strand, within RR42_RS23500 at 598.931 kb on - strand, within RR42_RS23500 at 598.969 kb on + strand, within RR42_RS23500 at 598.969 kb on + strand, within RR42_RS23500 at 599.120 kb on - strand at 599.120 kb on - strand at 599.267 kb on - strand at 599.603 kb on - strand, within RR42_RS23505 at 599.603 kb on - strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.705 kb on - strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 600.010 kb on + strand, within RR42_RS23505 at 600.206 kb on + strand at 600.206 kb on + strand at 600.207 kb on - strand at 600.207 kb on - strand at 600.260 kb on - strand at 600.276 kb on - strand at 600.310 kb on + strand at 600.311 kb on - strand at 600.363 kb on - strand at 600.392 kb on + strand at 600.392 kb on + strand at 600.393 kb on - strand at 600.398 kb on - strand at 600.454 kb on - strand at 600.679 kb on + strand, within RR42_RS23510 at 600.679 kb on + strand, within RR42_RS23510 at 600.679 kb on + strand, within RR42_RS23510 at 600.680 kb on - strand, within RR42_RS23510 at 600.680 kb on - strand, within RR42_RS23510 at 600.680 kb on - strand, within RR42_RS23510 at 600.979 kb on + strand, within RR42_RS23510 at 600.979 kb on + strand, within RR42_RS23510 at 600.979 kb on + strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 600.980 kb on - strand, within RR42_RS23510 at 601.141 kb on + strand, within RR42_RS23510
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 598,339 + RR42_RS23500 0.43 -1.0 598,425 - RR42_RS23500 0.49 +1.2 598,425 - RR42_RS23500 0.49 +0.4 598,438 + RR42_RS23500 0.50 -0.2 598,514 + RR42_RS23500 0.55 -0.0 598,516 + RR42_RS23500 0.56 +0.4 598,516 + RR42_RS23500 0.56 +0.7 598,517 - RR42_RS23500 0.56 +0.6 598,517 - RR42_RS23500 0.56 -0.2 598,795 + RR42_RS23500 0.76 +0.8 598,796 - RR42_RS23500 0.76 +0.1 598,796 - RR42_RS23500 0.76 +0.0 598,918 + RR42_RS23500 0.85 +1.1 598,919 - RR42_RS23500 0.85 +0.5 598,927 + RR42_RS23500 0.85 +1.0 598,927 + RR42_RS23500 0.85 +0.4 598,928 - RR42_RS23500 0.85 +4.1 598,931 - RR42_RS23500 0.85 -3.8 598,931 - RR42_RS23500 0.85 +1.2 598,969 + RR42_RS23500 0.88 -2.2 598,969 + RR42_RS23500 0.88 +0.5 599,120 - -0.1 599,120 - +0.5 599,267 - +2.7 599,603 - RR42_RS23505 0.37 -0.2 599,603 - RR42_RS23505 0.37 -1.6 599,704 + RR42_RS23505 0.48 +0.1 599,704 + RR42_RS23505 0.48 +0.7 599,704 + RR42_RS23505 0.48 +0.5 599,705 - RR42_RS23505 0.48 -0.6 599,869 + RR42_RS23505 0.66 -0.1 599,869 + RR42_RS23505 0.66 -1.8 599,869 + RR42_RS23505 0.66 -0.1 599,870 - RR42_RS23505 0.66 +1.5 599,870 - RR42_RS23505 0.66 +0.2 599,870 - RR42_RS23505 0.66 -1.4 599,870 - RR42_RS23505 0.66 +1.2 599,870 - RR42_RS23505 0.66 -1.5 599,870 - RR42_RS23505 0.66 +0.4 599,870 - RR42_RS23505 0.66 +1.1 599,870 - RR42_RS23505 0.66 +1.0 600,010 + RR42_RS23505 0.81 -2.7 600,206 + -0.3 600,206 + +0.0 600,207 - +0.1 600,207 - +0.2 600,260 - -1.6 600,276 - +0.2 600,310 + +0.8 600,311 - -0.3 600,363 - -1.6 600,392 + +1.5 600,392 + -0.7 600,393 - -0.1 600,398 - +0.7 600,454 - -0.8 600,679 + RR42_RS23510 0.33 -1.1 600,679 + RR42_RS23510 0.33 -0.7 600,679 + RR42_RS23510 0.33 +0.5 600,680 - RR42_RS23510 0.33 -0.7 600,680 - RR42_RS23510 0.33 -0.9 600,680 - RR42_RS23510 0.33 +0.3 600,979 + RR42_RS23510 0.66 +0.6 600,979 + RR42_RS23510 0.66 -1.5 600,979 + RR42_RS23510 0.66 +0.2 600,980 - RR42_RS23510 0.66 -0.0 600,980 - RR42_RS23510 0.66 +0.3 600,980 - RR42_RS23510 0.66 +0.9 600,980 - RR42_RS23510 0.66 +0.7 601,141 + RR42_RS23510 0.83 -0.2
Or see this region's nucleotide sequence