Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22865

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22860 and RR42_RS22865 are separated by 57 nucleotidesRR42_RS22865 and RR42_RS22870 are separated by 311 nucleotides RR42_RS22860: RR42_RS22860 - l-threonine 3-dehydrogenase, at 459,894 to 460,949 _RS22860 RR42_RS22865: RR42_RS22865 - 2-amino-3-ketobutyrate CoA ligase, at 461,007 to 462,209 _RS22865 RR42_RS22870: RR42_RS22870 - sugar ABC transporter substrate-binding protein, at 462,521 to 463,930 _RS22870 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 460.064 kb on - strand, within RR42_RS22860at 460.090 kb on + strand, within RR42_RS22860at 460.090 kb on + strand, within RR42_RS22860at 460.091 kb on - strand, within RR42_RS22860at 460.579 kb on + strand, within RR42_RS22860at 460.676 kb on + strand, within RR42_RS22860at 460.676 kb on + strand, within RR42_RS22860at 460.676 kb on + strand, within RR42_RS22860at 460.752 kb on + strand, within RR42_RS22860at 460.752 kb on + strand, within RR42_RS22860at 460.752 kb on + strand, within RR42_RS22860at 460.753 kb on - strand, within RR42_RS22860at 460.756 kb on + strand, within RR42_RS22860at 460.757 kb on - strand, within RR42_RS22860at 460.820 kb on + strand, within RR42_RS22860at 460.820 kb on + strand, within RR42_RS22860at 461.079 kb on - strandat 461.153 kb on - strand, within RR42_RS22865at 461.153 kb on - strand, within RR42_RS22865at 461.249 kb on + strand, within RR42_RS22865at 461.250 kb on - strand, within RR42_RS22865at 461.452 kb on + strand, within RR42_RS22865at 461.453 kb on - strand, within RR42_RS22865at 462.055 kb on + strand, within RR42_RS22865at 462.055 kb on + strand, within RR42_RS22865at 462.055 kb on + strand, within RR42_RS22865at 462.055 kb on + strand, within RR42_RS22865at 462.056 kb on - strand, within RR42_RS22865at 462.056 kb on - strand, within RR42_RS22865at 462.079 kb on - strand, within RR42_RS22865at 462.079 kb on - strand, within RR42_RS22865at 462.176 kb on + strandat 462.177 kb on - strandat 462.357 kb on - strandat 462.534 kb on + strandat 462.534 kb on + strandat 462.535 kb on - strandat 462.564 kb on - strandat 462.770 kb on + strand, within RR42_RS22870at 462.770 kb on + strand, within RR42_RS22870at 462.770 kb on + strand, within RR42_RS22870at 462.770 kb on + strand, within RR42_RS22870at 462.771 kb on - strand, within RR42_RS22870at 462.771 kb on - strand, within RR42_RS22870at 462.771 kb on - strand, within RR42_RS22870at 462.822 kb on + strand, within RR42_RS22870at 462.822 kb on + strand, within RR42_RS22870at 462.823 kb on - strand, within RR42_RS22870at 462.914 kb on + strand, within RR42_RS22870at 462.915 kb on - strand, within RR42_RS22870at 462.947 kb on + strand, within RR42_RS22870at 462.948 kb on - strand, within RR42_RS22870at 463.001 kb on - strand, within RR42_RS22870at 463.026 kb on - strand, within RR42_RS22870at 463.026 kb on - strand, within RR42_RS22870

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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460,064 - RR42_RS22860 0.16 +0.6
460,090 + RR42_RS22860 0.19 +0.6
460,090 + RR42_RS22860 0.19 +0.8
460,091 - RR42_RS22860 0.19 +0.5
460,579 + RR42_RS22860 0.65 +0.2
460,676 + RR42_RS22860 0.74 +0.3
460,676 + RR42_RS22860 0.74 +1.8
460,676 + RR42_RS22860 0.74 +1.7
460,752 + RR42_RS22860 0.81 +0.4
460,752 + RR42_RS22860 0.81 +0.3
460,752 + RR42_RS22860 0.81 +0.0
460,753 - RR42_RS22860 0.81 +0.3
460,756 + RR42_RS22860 0.82 -0.3
460,757 - RR42_RS22860 0.82 -1.0
460,820 + RR42_RS22860 0.88 -1.3
460,820 + RR42_RS22860 0.88 -1.3
461,079 - +1.0
461,153 - RR42_RS22865 0.12 -2.5
461,153 - RR42_RS22865 0.12 +1.4
461,249 + RR42_RS22865 0.20 -1.1
461,250 - RR42_RS22865 0.20 +0.1
461,452 + RR42_RS22865 0.37 +0.3
461,453 - RR42_RS22865 0.37 -0.0
462,055 + RR42_RS22865 0.87 +1.0
462,055 + RR42_RS22865 0.87 +0.9
462,055 + RR42_RS22865 0.87 +0.8
462,055 + RR42_RS22865 0.87 +0.7
462,056 - RR42_RS22865 0.87 +1.8
462,056 - RR42_RS22865 0.87 -1.2
462,079 - RR42_RS22865 0.89 -1.5
462,079 - RR42_RS22865 0.89 +1.3
462,176 + -3.1
462,177 - -1.1
462,357 - +0.5
462,534 + -0.5
462,534 + +0.6
462,535 - -0.0
462,564 - -0.9
462,770 + RR42_RS22870 0.18 +0.3
462,770 + RR42_RS22870 0.18 -1.4
462,770 + RR42_RS22870 0.18 +2.1
462,770 + RR42_RS22870 0.18 +0.6
462,771 - RR42_RS22870 0.18 -1.0
462,771 - RR42_RS22870 0.18 +0.2
462,771 - RR42_RS22870 0.18 +0.8
462,822 + RR42_RS22870 0.21 -1.7
462,822 + RR42_RS22870 0.21 +0.3
462,823 - RR42_RS22870 0.21 +1.1
462,914 + RR42_RS22870 0.28 +0.0
462,915 - RR42_RS22870 0.28 +0.5
462,947 + RR42_RS22870 0.30 -2.1
462,948 - RR42_RS22870 0.30 +0.4
463,001 - RR42_RS22870 0.34 +1.6
463,026 - RR42_RS22870 0.36 -0.3
463,026 - RR42_RS22870 0.36 -1.4

Or see this region's nucleotide sequence