Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22795

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22790 and RR42_RS22795 are separated by 66 nucleotidesRR42_RS22795 and RR42_RS22800 are separated by 30 nucleotides RR42_RS22790: RR42_RS22790 - MmgE/PrpD family protein, at 444,998 to 446,410 _RS22790 RR42_RS22795: RR42_RS22795 - hypothetical protein, at 446,477 to 447,442 _RS22795 RR42_RS22800: RR42_RS22800 - DSBA oxidoreductase, at 447,473 to 449,029 _RS22800 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1at 445.604 kb on + strand, within RR42_RS22790at 445.944 kb on - strand, within RR42_RS22790at 446.107 kb on + strand, within RR42_RS22790at 446.270 kb on + strandat 446.270 kb on + strandat 446.271 kb on - strandat 446.271 kb on - strandat 446.728 kb on + strand, within RR42_RS22795at 446.728 kb on + strand, within RR42_RS22795at 446.728 kb on + strand, within RR42_RS22795at 446.729 kb on - strand, within RR42_RS22795at 446.729 kb on - strand, within RR42_RS22795at 446.729 kb on - strand, within RR42_RS22795at 447.017 kb on + strand, within RR42_RS22795at 447.017 kb on + strand, within RR42_RS22795at 447.018 kb on - strand, within RR42_RS22795at 447.230 kb on + strand, within RR42_RS22795at 447.230 kb on + strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.787 kb on - strand, within RR42_RS22800at 447.972 kb on + strand, within RR42_RS22800at 447.972 kb on + strand, within RR42_RS22800at 447.972 kb on + strand, within RR42_RS22800at 448.170 kb on + strand, within RR42_RS22800at 448.170 kb on + strand, within RR42_RS22800at 448.171 kb on - strand, within RR42_RS22800at 448.171 kb on - strand, within RR42_RS22800at 448.171 kb on - strand, within RR42_RS22800at 448.172 kb on + strand, within RR42_RS22800at 448.357 kb on + strand, within RR42_RS22800at 448.357 kb on + strand, within RR42_RS22800at 448.357 kb on + strand, within RR42_RS22800at 448.358 kb on - strand, within RR42_RS22800

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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445,604 + RR42_RS22790 0.43 +0.6
445,944 - RR42_RS22790 0.67 +0.3
446,107 + RR42_RS22790 0.78 +1.3
446,270 + -2.0
446,270 + +0.3
446,271 - -2.7
446,271 - +0.4
446,728 + RR42_RS22795 0.26 -1.9
446,728 + RR42_RS22795 0.26 -0.4
446,728 + RR42_RS22795 0.26 -0.7
446,729 - RR42_RS22795 0.26 +1.5
446,729 - RR42_RS22795 0.26 +0.2
446,729 - RR42_RS22795 0.26 -0.5
447,017 + RR42_RS22795 0.56 +1.0
447,017 + RR42_RS22795 0.56 -0.8
447,018 - RR42_RS22795 0.56 +0.8
447,230 + RR42_RS22795 0.78 +0.5
447,230 + RR42_RS22795 0.78 +0.3
447,231 - RR42_RS22795 0.78 +0.2
447,231 - RR42_RS22795 0.78 -1.7
447,231 - RR42_RS22795 0.78 -2.0
447,231 - RR42_RS22795 0.78 +0.3
447,787 - RR42_RS22800 0.20 -0.2
447,972 + RR42_RS22800 0.32 -0.7
447,972 + RR42_RS22800 0.32 +0.5
447,972 + RR42_RS22800 0.32 -1.2
448,170 + RR42_RS22800 0.45 +0.4
448,170 + RR42_RS22800 0.45 +0.7
448,171 - RR42_RS22800 0.45 +0.9
448,171 - RR42_RS22800 0.45 -0.3
448,171 - RR42_RS22800 0.45 -0.8
448,172 + RR42_RS22800 0.45 -0.4
448,357 + RR42_RS22800 0.57 +0.7
448,357 + RR42_RS22800 0.57 +0.1
448,357 + RR42_RS22800 0.57 +0.5
448,358 - RR42_RS22800 0.57 -0.2

Or see this region's nucleotide sequence