Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22760 and RR42_RS22765 are separated by 237 nucleotides RR42_RS22765 and RR42_RS22770 are separated by 56 nucleotides
RR42_RS22760: RR42_RS22760 - GntR family transcriptional regulator, at 439,240 to 440,004
_RS22760
RR42_RS22765: RR42_RS22765 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 440,242 to 441,084
_RS22765
RR42_RS22770: RR42_RS22770 - 3-isopropylmalate dehydratase, at 441,141 to 442,541
_RS22770
Position (kb) 440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 439.265 kb on - strand at 439.305 kb on + strand at 439.306 kb on - strand at 439.306 kb on - strand at 439.306 kb on - strand at 439.340 kb on + strand, within RR42_RS22760 at 439.340 kb on + strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.352 kb on + strand, within RR42_RS22760 at 439.758 kb on + strand, within RR42_RS22760 at 439.938 kb on - strand at 439.938 kb on - strand at 440.005 kb on - strand at 440.073 kb on + strand at 440.073 kb on + strand at 440.073 kb on + strand at 440.074 kb on - strand at 440.074 kb on - strand at 440.194 kb on + strand at 440.194 kb on + strand at 440.194 kb on + strand at 440.256 kb on + strand at 440.256 kb on + strand at 440.257 kb on - strand at 440.257 kb on - strand at 440.257 kb on - strand at 440.308 kb on + strand at 440.308 kb on + strand at 440.359 kb on + strand, within RR42_RS22765 at 440.359 kb on + strand, within RR42_RS22765 at 440.360 kb on - strand, within RR42_RS22765 at 440.360 kb on - strand, within RR42_RS22765 at 440.536 kb on + strand, within RR42_RS22765 at 440.536 kb on + strand, within RR42_RS22765 at 440.915 kb on - strand, within RR42_RS22765 at 440.915 kb on - strand, within RR42_RS22765 at 441.292 kb on + strand, within RR42_RS22770 at 441.292 kb on + strand, within RR42_RS22770 at 441.293 kb on - strand, within RR42_RS22770 at 441.293 kb on - strand, within RR42_RS22770 at 441.293 kb on - strand, within RR42_RS22770 at 441.363 kb on - strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.536 kb on + strand, within RR42_RS22770 at 441.588 kb on - strand, within RR42_RS22770 at 441.588 kb on - strand, within RR42_RS22770 at 441.698 kb on + strand, within RR42_RS22770 at 441.699 kb on - strand, within RR42_RS22770 at 441.882 kb on + strand, within RR42_RS22770
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 439,265 - +0.3 439,305 + +1.9 439,306 - -1.6 439,306 - -0.3 439,306 - -0.0 439,340 + RR42_RS22760 0.13 -0.5 439,340 + RR42_RS22760 0.13 -1.0 439,341 - RR42_RS22760 0.13 -1.8 439,341 - RR42_RS22760 0.13 -0.8 439,341 - RR42_RS22760 0.13 -1.5 439,341 - RR42_RS22760 0.13 -0.6 439,341 - RR42_RS22760 0.13 -0.5 439,352 + RR42_RS22760 0.15 -3.6 439,758 + RR42_RS22760 0.68 +2.2 439,938 - +1.3 439,938 - -1.3 440,005 - +0.0 440,073 + -0.6 440,073 + +0.5 440,073 + -0.8 440,074 - +0.6 440,074 - +1.2 440,194 + +0.1 440,194 + -0.7 440,194 + -0.3 440,256 + +0.4 440,256 + -0.4 440,257 - +2.3 440,257 - +0.7 440,257 - -0.3 440,308 + -1.0 440,308 + -2.0 440,359 + RR42_RS22765 0.14 -0.6 440,359 + RR42_RS22765 0.14 -1.0 440,360 - RR42_RS22765 0.14 +0.0 440,360 - RR42_RS22765 0.14 -0.7 440,536 + RR42_RS22765 0.35 -1.8 440,536 + RR42_RS22765 0.35 -1.8 440,915 - RR42_RS22765 0.80 +0.1 440,915 - RR42_RS22765 0.80 -0.6 441,292 + RR42_RS22770 0.11 -0.2 441,292 + RR42_RS22770 0.11 -1.0 441,293 - RR42_RS22770 0.11 -1.3 441,293 - RR42_RS22770 0.11 -1.3 441,293 - RR42_RS22770 0.11 +2.0 441,363 - RR42_RS22770 0.16 -0.6 441,530 + RR42_RS22770 0.28 +2.1 441,530 + RR42_RS22770 0.28 -0.0 441,530 + RR42_RS22770 0.28 -1.5 441,530 + RR42_RS22770 0.28 -0.7 441,536 + RR42_RS22770 0.28 +1.6 441,588 - RR42_RS22770 0.32 +0.1 441,588 - RR42_RS22770 0.32 +3.1 441,698 + RR42_RS22770 0.40 +0.3 441,699 - RR42_RS22770 0.40 -3.3 441,882 + RR42_RS22770 0.53 -2.1
Or see this region's nucleotide sequence