Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22475

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22470 and RR42_RS22475 are separated by 101 nucleotidesRR42_RS22475 and RR42_RS22480 are separated by 35 nucleotides RR42_RS22470: RR42_RS22470 - MFS transporter, at 378,168 to 379,493 _RS22470 RR42_RS22475: RR42_RS22475 - hypothetical protein, at 379,595 to 379,810 _RS22475 RR42_RS22480: RR42_RS22480 - FAD-dependent oxidoreductase, at 379,846 to 381,579 _RS22480 Position (kb) 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 378.608 kb on - strand, within RR42_RS22470at 378.707 kb on + strand, within RR42_RS22470at 378.707 kb on + strand, within RR42_RS22470at 378.708 kb on - strand, within RR42_RS22470at 378.721 kb on + strand, within RR42_RS22470at 378.722 kb on - strand, within RR42_RS22470at 378.934 kb on + strand, within RR42_RS22470at 378.935 kb on - strand, within RR42_RS22470at 379.073 kb on - strand, within RR42_RS22470at 379.073 kb on - strand, within RR42_RS22470at 379.073 kb on - strand, within RR42_RS22470at 379.133 kb on - strand, within RR42_RS22470at 379.133 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.298 kb on - strand, within RR42_RS22470at 379.376 kb on + strandat 379.377 kb on - strandat 379.381 kb on + strandat 379.381 kb on + strandat 379.382 kb on - strandat 379.382 kb on - strandat 379.382 kb on - strandat 379.998 kb on - strandat 380.022 kb on - strand, within RR42_RS22480at 380.203 kb on + strand, within RR42_RS22480at 380.204 kb on - strand, within RR42_RS22480at 380.356 kb on - strand, within RR42_RS22480at 380.356 kb on - strand, within RR42_RS22480at 380.493 kb on - strand, within RR42_RS22480at 380.510 kb on + strand, within RR42_RS22480at 380.511 kb on - strand, within RR42_RS22480at 380.511 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.699 kb on + strand, within RR42_RS22480

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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378,608 - RR42_RS22470 0.33 -3.3
378,707 + RR42_RS22470 0.41 -1.4
378,707 + RR42_RS22470 0.41 +0.3
378,708 - RR42_RS22470 0.41 -0.0
378,721 + RR42_RS22470 0.42 +2.8
378,722 - RR42_RS22470 0.42 +0.6
378,934 + RR42_RS22470 0.58 +0.6
378,935 - RR42_RS22470 0.58 +0.3
379,073 - RR42_RS22470 0.68 +1.8
379,073 - RR42_RS22470 0.68 -0.8
379,073 - RR42_RS22470 0.68 +0.9
379,133 - RR42_RS22470 0.73 -0.4
379,133 - RR42_RS22470 0.73 +1.3
379,274 - RR42_RS22470 0.83 -0.4
379,274 - RR42_RS22470 0.83 -1.4
379,274 - RR42_RS22470 0.83 +2.0
379,274 - RR42_RS22470 0.83 -1.4
379,298 - RR42_RS22470 0.85 +0.8
379,376 + -0.2
379,377 - +1.0
379,381 + -0.3
379,381 + +0.3
379,382 - +0.3
379,382 - +1.7
379,382 - -2.7
379,998 - -0.2
380,022 - RR42_RS22480 0.10 +2.1
380,203 + RR42_RS22480 0.21 -2.9
380,204 - RR42_RS22480 0.21 -2.7
380,356 - RR42_RS22480 0.29 +0.4
380,356 - RR42_RS22480 0.29 +1.0
380,493 - RR42_RS22480 0.37 +0.4
380,510 + RR42_RS22480 0.38 +0.5
380,511 - RR42_RS22480 0.38 +0.3
380,511 - RR42_RS22480 0.38 -0.7
380,698 - RR42_RS22480 0.49 -0.4
380,698 - RR42_RS22480 0.49 +0.8
380,698 - RR42_RS22480 0.49 -0.4
380,699 + RR42_RS22480 0.49 -1.0

Or see this region's nucleotide sequence