Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22280 and RR42_RS22285 are separated by 72 nucleotides RR42_RS22285 and RR42_RS22290 are separated by 123 nucleotides RR42_RS22290 and RR42_RS22295 are separated by 50 nucleotides RR42_RS22295 and RR42_RS22300 are separated by 226 nucleotides
RR42_RS22280: RR42_RS22280 - cupin, at 340,023 to 340,478
_RS22280
RR42_RS22285: RR42_RS22285 - methionine sulfoxide reductase A, at 340,551 to 341,291
_RS22285
RR42_RS22290: RR42_RS22290 - cytochrome C biogenesis protein, at 341,415 to 343,223
_RS22290
RR42_RS22295: RR42_RS22295 - methionine sulfoxide reductase B, at 343,274 to 343,813
_RS22295
RR42_RS22300: RR42_RS22300 - chemotaxis protein CheY, at 344,040 to 344,762
_RS22300
Position (kb) 341
342
343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 340.437 kb on + strand at 340.651 kb on + strand, within RR42_RS22285 at 340.651 kb on + strand, within RR42_RS22285 at 340.652 kb on - strand, within RR42_RS22285 at 340.690 kb on + strand, within RR42_RS22285 at 340.691 kb on - strand, within RR42_RS22285 at 340.779 kb on - strand, within RR42_RS22285 at 340.780 kb on + strand, within RR42_RS22285 at 340.780 kb on + strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.781 kb on - strand, within RR42_RS22285 at 340.835 kb on - strand, within RR42_RS22285 at 340.994 kb on - strand, within RR42_RS22285 at 341.322 kb on + strand at 341.323 kb on - strand at 341.355 kb on + strand at 341.435 kb on - strand at 341.435 kb on - strand at 341.513 kb on - strand at 341.776 kb on + strand, within RR42_RS22290 at 341.776 kb on + strand, within RR42_RS22290 at 341.776 kb on + strand, within RR42_RS22290 at 341.777 kb on - strand, within RR42_RS22290 at 341.777 kb on - strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 341.845 kb on + strand, within RR42_RS22290 at 342.001 kb on + strand, within RR42_RS22290 at 342.055 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.100 kb on + strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.254 kb on - strand, within RR42_RS22290 at 342.286 kb on + strand, within RR42_RS22290 at 342.287 kb on - strand, within RR42_RS22290 at 342.500 kb on + strand, within RR42_RS22290 at 343.202 kb on - strand at 343.211 kb on + strand at 343.211 kb on + strand at 343.436 kb on + strand, within RR42_RS22295 at 343.659 kb on - strand, within RR42_RS22295 at 343.835 kb on + strand at 343.835 kb on + strand at 343.893 kb on + strand at 343.894 kb on - strand at 343.894 kb on - strand at 343.934 kb on + strand at 343.972 kb on - strand at 344.095 kb on + strand at 344.095 kb on + strand at 344.096 kb on - strand at 344.096 kb on - strand at 344.124 kb on + strand, within RR42_RS22300 at 344.125 kb on - strand, within RR42_RS22300
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 340,437 + +1.2 340,651 + RR42_RS22285 0.13 -0.5 340,651 + RR42_RS22285 0.13 +0.4 340,652 - RR42_RS22285 0.14 +0.3 340,690 + RR42_RS22285 0.19 -0.1 340,691 - RR42_RS22285 0.19 +0.1 340,779 - RR42_RS22285 0.31 -1.5 340,780 + RR42_RS22285 0.31 -0.1 340,780 + RR42_RS22285 0.31 -0.2 340,781 - RR42_RS22285 0.31 +0.6 340,781 - RR42_RS22285 0.31 -2.6 340,781 - RR42_RS22285 0.31 -0.7 340,835 - RR42_RS22285 0.38 -0.7 340,994 - RR42_RS22285 0.60 +1.5 341,322 + +0.4 341,323 - -0.4 341,355 + -0.2 341,435 - +1.1 341,435 - +0.5 341,513 - +0.4 341,776 + RR42_RS22290 0.20 -1.0 341,776 + RR42_RS22290 0.20 +0.4 341,776 + RR42_RS22290 0.20 +1.3 341,777 - RR42_RS22290 0.20 -0.1 341,777 - RR42_RS22290 0.20 +0.7 341,845 + RR42_RS22290 0.24 +0.0 341,845 + RR42_RS22290 0.24 +1.7 341,845 + RR42_RS22290 0.24 +0.8 342,001 + RR42_RS22290 0.32 +1.1 342,055 + RR42_RS22290 0.35 +1.2 342,100 + RR42_RS22290 0.38 -1.8 342,100 + RR42_RS22290 0.38 +0.8 342,100 + RR42_RS22290 0.38 -2.2 342,254 - RR42_RS22290 0.46 +0.3 342,254 - RR42_RS22290 0.46 -0.5 342,254 - RR42_RS22290 0.46 -1.9 342,254 - RR42_RS22290 0.46 +0.3 342,286 + RR42_RS22290 0.48 -0.9 342,287 - RR42_RS22290 0.48 +0.9 342,500 + RR42_RS22290 0.60 -0.3 343,202 - -3.1 343,211 + -0.4 343,211 + +0.9 343,436 + RR42_RS22295 0.30 +0.0 343,659 - RR42_RS22295 0.71 -0.1 343,835 + -1.8 343,835 + +0.8 343,893 + +0.9 343,894 - +0.3 343,894 - -0.6 343,934 + +1.0 343,972 - -2.7 344,095 + -1.2 344,095 + +0.8 344,096 - -0.4 344,096 - -0.1 344,124 + RR42_RS22300 0.12 +0.5 344,125 - RR42_RS22300 0.12 +0.6
Or see this region's nucleotide sequence