Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22235 and RR42_RS22240 are separated by 821 nucleotides RR42_RS22240 and RR42_RS22245 are separated by 364 nucleotides
RR42_RS22235: RR42_RS22235 - peptidase M19, at 326,256 to 326,885
_RS22235
RR42_RS22240: RR42_RS22240 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 327,707 to 329,008
_RS22240
RR42_RS22245: RR42_RS22245 - cytochrome C biogenesis protein, at 329,373 to 330,320
_RS22245
Position (kb) 327
328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 326.827 kb on + strand at 326.828 kb on - strand at 326.828 kb on - strand at 327.005 kb on - strand at 327.651 kb on + strand at 327.652 kb on - strand at 327.652 kb on - strand at 327.697 kb on - strand at 327.751 kb on + strand at 327.752 kb on - strand at 327.752 kb on - strand at 327.752 kb on - strand at 327.755 kb on - strand at 327.902 kb on - strand, within RR42_RS22240 at 327.902 kb on - strand, within RR42_RS22240 at 327.902 kb on - strand, within RR42_RS22240 at 328.196 kb on + strand, within RR42_RS22240 at 328.196 kb on + strand, within RR42_RS22240 at 328.197 kb on - strand, within RR42_RS22240 at 328.197 kb on - strand, within RR42_RS22240 at 328.724 kb on + strand, within RR42_RS22240 at 328.850 kb on + strand, within RR42_RS22240 at 329.007 kb on - strand at 329.024 kb on + strand at 329.176 kb on + strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.197 kb on - strand at 329.228 kb on + strand at 329.228 kb on + strand at 329.295 kb on + strand at 329.295 kb on + strand at 329.296 kb on - strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.298 kb on - strand at 329.298 kb on - strand at 329.301 kb on + strand at 329.302 kb on - strand at 329.302 kb on - strand at 329.302 kb on - strand at 329.379 kb on + strand at 329.380 kb on - strand at 329.391 kb on + strand at 329.392 kb on - strand at 329.466 kb on + strand at 329.467 kb on - strand at 329.467 kb on - strand at 329.529 kb on + strand, within RR42_RS22245 at 329.530 kb on - strand, within RR42_RS22245 at 329.587 kb on - strand, within RR42_RS22245 at 329.640 kb on + strand, within RR42_RS22245 at 329.640 kb on + strand, within RR42_RS22245 at 329.834 kb on + strand, within RR42_RS22245 at 329.834 kb on + strand, within RR42_RS22245 at 329.983 kb on - strand, within RR42_RS22245
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 326,827 + -0.2 326,828 - -2.0 326,828 - -1.5 327,005 - -0.4 327,651 + -0.6 327,652 - +1.9 327,652 - +1.1 327,697 - -0.7 327,751 + +1.9 327,752 - +0.3 327,752 - -0.9 327,752 - -0.6 327,755 - -2.1 327,902 - RR42_RS22240 0.15 -1.8 327,902 - RR42_RS22240 0.15 +2.0 327,902 - RR42_RS22240 0.15 -0.2 328,196 + RR42_RS22240 0.38 +0.6 328,196 + RR42_RS22240 0.38 -0.4 328,197 - RR42_RS22240 0.38 -2.7 328,197 - RR42_RS22240 0.38 +0.7 328,724 + RR42_RS22240 0.78 +0.4 328,850 + RR42_RS22240 0.88 +1.2 329,007 - -0.7 329,024 + +0.8 329,176 + +1.3 329,177 - +0.3 329,177 - -0.0 329,177 - +1.0 329,177 - +0.1 329,197 - +1.8 329,228 + +0.5 329,228 + -1.1 329,295 + -1.5 329,295 + -0.7 329,296 - -0.0 329,297 + +1.3 329,297 + -0.6 329,297 + -0.4 329,297 + -0.5 329,298 - -0.9 329,298 - +0.8 329,301 + +2.6 329,302 - +1.2 329,302 - +0.5 329,302 - -1.8 329,379 + +0.3 329,380 - -1.2 329,391 + -0.2 329,392 - -1.4 329,466 + +0.1 329,467 - -1.2 329,467 - -1.4 329,529 + RR42_RS22245 0.16 -2.2 329,530 - RR42_RS22245 0.17 -0.1 329,587 - RR42_RS22245 0.23 -0.2 329,640 + RR42_RS22245 0.28 -2.7 329,640 + RR42_RS22245 0.28 -0.2 329,834 + RR42_RS22245 0.49 -1.0 329,834 + RR42_RS22245 0.49 -1.7 329,983 - RR42_RS22245 0.64 -0.7
Or see this region's nucleotide sequence