Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21970

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21965 and RR42_RS21970 are separated by 923 nucleotidesRR42_RS21970 and RR42_RS21975 overlap by 38 nucleotides RR42_RS21965: RR42_RS21965 - hypothetical protein, at 253,337 to 254,548 _RS21965 RR42_RS21970: RR42_RS21970 - hypothetical protein, at 255,472 to 258,339 _RS21970 RR42_RS21975: RR42_RS21975 - hypothetical protein, at 258,302 to 262,522 _RS21975 Position (kb) 255 256 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.616 kb on + strandat 254.617 kb on - strandat 254.623 kb on + strandat 254.623 kb on + strandat 254.624 kb on - strandat 254.630 kb on + strandat 254.631 kb on - strandat 254.754 kb on + strandat 254.831 kb on + strandat 254.949 kb on + strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.957 kb on + strandat 254.957 kb on + strandat 254.957 kb on + strandat 254.958 kb on - strandat 254.958 kb on - strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.136 kb on - strandat 255.136 kb on - strandat 255.149 kb on + strandat 255.156 kb on - strandat 255.156 kb on - strandat 255.163 kb on + strandat 255.163 kb on + strandat 255.164 kb on - strandat 255.164 kb on - strandat 255.164 kb on - strandat 255.165 kb on + strandat 255.165 kb on + strandat 255.210 kb on + strandat 255.210 kb on + strandat 255.211 kb on - strandat 255.684 kb on + strandat 255.700 kb on + strandat 255.701 kb on - strandat 256.055 kb on - strand, within RR42_RS21970at 256.174 kb on + strand, within RR42_RS21970at 256.273 kb on + strand, within RR42_RS21970at 256.274 kb on - strand, within RR42_RS21970at 256.417 kb on + strand, within RR42_RS21970at 256.417 kb on + strand, within RR42_RS21970at 256.418 kb on - strand, within RR42_RS21970at 256.418 kb on - strand, within RR42_RS21970at 256.418 kb on - strand, within RR42_RS21970at 256.427 kb on - strand, within RR42_RS21970at 256.811 kb on - strand, within RR42_RS21970at 256.847 kb on + strand, within RR42_RS21970at 256.848 kb on - strand, within RR42_RS21970at 256.848 kb on - strand, within RR42_RS21970at 256.858 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.144 kb on - strand, within RR42_RS21970at 257.200 kb on + strand, within RR42_RS21970at 257.201 kb on - strand, within RR42_RS21970at 257.323 kb on + strand, within RR42_RS21970at 257.367 kb on + strand, within RR42_RS21970at 257.367 kb on + strand, within RR42_RS21970at 257.368 kb on - strand, within RR42_RS21970at 257.368 kb on - strand, within RR42_RS21970at 257.497 kb on - strand, within RR42_RS21970at 257.577 kb on - strand, within RR42_RS21970at 257.577 kb on - strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.629 kb on + strand, within RR42_RS21970at 257.633 kb on - strand, within RR42_RS21970at 257.633 kb on - strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.705 kb on - strand, within RR42_RS21970at 257.705 kb on - strand, within RR42_RS21970at 257.707 kb on + strand, within RR42_RS21970at 257.707 kb on + strand, within RR42_RS21970at 257.717 kb on - strand, within RR42_RS21970at 257.761 kb on + strand, within RR42_RS21970at 257.767 kb on + strand, within RR42_RS21970at 257.810 kb on - strand, within RR42_RS21970at 257.810 kb on - strand, within RR42_RS21970at 258.004 kb on + strand, within RR42_RS21970at 258.005 kb on - strand, within RR42_RS21970at 258.060 kb on + strandat 258.173 kb on - strandat 258.549 kb on - strandat 258.773 kb on + strand, within RR42_RS21975at 258.773 kb on + strand, within RR42_RS21975at 258.774 kb on - strand, within RR42_RS21975at 258.774 kb on - strand, within RR42_RS21975at 258.897 kb on - strand, within RR42_RS21975at 258.897 kb on - strand, within RR42_RS21975at 259.052 kb on + strand, within RR42_RS21975at 259.052 kb on + strand, within RR42_RS21975at 259.052 kb on + strand, within RR42_RS21975at 259.211 kb on + strand, within RR42_RS21975at 259.212 kb on - strand, within RR42_RS21975at 259.212 kb on - strand, within RR42_RS21975

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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254,616 + -0.8
254,617 - +0.3
254,623 + -1.2
254,623 + -2.3
254,624 - -1.4
254,630 + -1.1
254,631 - -0.6
254,754 + -0.3
254,831 + +0.9
254,949 + -0.1
254,950 - -1.1
254,950 - +0.6
254,950 - -1.0
254,950 - +0.5
254,950 - -0.3
254,957 + +0.2
254,957 + -0.7
254,957 + +1.1
254,958 - -1.4
254,958 - +0.2
255,135 + +0.3
255,135 + +0.4
255,135 + -0.0
255,135 + -0.6
255,135 + -1.1
255,136 - +2.2
255,136 - -1.4
255,149 + +0.4
255,156 - +1.6
255,156 - -0.8
255,163 + -1.1
255,163 + +1.0
255,164 - -0.6
255,164 - +2.4
255,164 - +0.5
255,165 + -2.4
255,165 + +0.0
255,210 + +0.2
255,210 + +0.2
255,211 - -0.2
255,684 + -0.1
255,700 + -1.9
255,701 - +0.5
256,055 - RR42_RS21970 0.20 +0.8
256,174 + RR42_RS21970 0.24 +0.6
256,273 + RR42_RS21970 0.28 +0.6
256,274 - RR42_RS21970 0.28 -1.4
256,417 + RR42_RS21970 0.33 +0.1
256,417 + RR42_RS21970 0.33 +0.4
256,418 - RR42_RS21970 0.33 +0.4
256,418 - RR42_RS21970 0.33 +1.0
256,418 - RR42_RS21970 0.33 -2.6
256,427 - RR42_RS21970 0.33 -0.9
256,811 - RR42_RS21970 0.47 +0.1
256,847 + RR42_RS21970 0.48 +1.0
256,848 - RR42_RS21970 0.48 +1.6
256,848 - RR42_RS21970 0.48 +0.5
256,858 + RR42_RS21970 0.48 +1.1
257,143 + RR42_RS21970 0.58 +0.4
257,143 + RR42_RS21970 0.58 -0.1
257,143 + RR42_RS21970 0.58 +0.7
257,143 + RR42_RS21970 0.58 -1.8
257,144 - RR42_RS21970 0.58 -1.7
257,200 + RR42_RS21970 0.60 +0.7
257,201 - RR42_RS21970 0.60 -1.2
257,323 + RR42_RS21970 0.65 -0.6
257,367 + RR42_RS21970 0.66 +0.2
257,367 + RR42_RS21970 0.66 -0.2
257,368 - RR42_RS21970 0.66 +2.7
257,368 - RR42_RS21970 0.66 -0.6
257,497 - RR42_RS21970 0.71 -0.8
257,577 - RR42_RS21970 0.73 +0.3
257,577 - RR42_RS21970 0.73 -0.1
257,605 + RR42_RS21970 0.74 -0.8
257,605 + RR42_RS21970 0.74 +1.1
257,605 + RR42_RS21970 0.74 +0.1
257,605 + RR42_RS21970 0.74 +0.5
257,629 + RR42_RS21970 0.75 +0.4
257,633 - RR42_RS21970 0.75 -0.6
257,633 - RR42_RS21970 0.75 +1.5
257,704 + RR42_RS21970 0.78 -0.8
257,704 + RR42_RS21970 0.78 +0.2
257,704 + RR42_RS21970 0.78 -0.2
257,704 + RR42_RS21970 0.78 -0.3
257,705 - RR42_RS21970 0.78 +0.1
257,705 - RR42_RS21970 0.78 -1.8
257,707 + RR42_RS21970 0.78 +1.6
257,707 + RR42_RS21970 0.78 +0.3
257,717 - RR42_RS21970 0.78 +0.2
257,761 + RR42_RS21970 0.80 -1.4
257,767 + RR42_RS21970 0.80 +0.9
257,810 - RR42_RS21970 0.82 -0.2
257,810 - RR42_RS21970 0.82 +0.2
258,004 + RR42_RS21970 0.88 -1.0
258,005 - RR42_RS21970 0.88 +0.7
258,060 + +0.9
258,173 - -0.1
258,549 - -0.3
258,773 + RR42_RS21975 0.11 +0.0
258,773 + RR42_RS21975 0.11 +0.1
258,774 - RR42_RS21975 0.11 -3.0
258,774 - RR42_RS21975 0.11 -3.7
258,897 - RR42_RS21975 0.14 +0.6
258,897 - RR42_RS21975 0.14 +1.0
259,052 + RR42_RS21975 0.18 -0.4
259,052 + RR42_RS21975 0.18 +0.7
259,052 + RR42_RS21975 0.18 +0.1
259,211 + RR42_RS21975 0.22 +1.4
259,212 - RR42_RS21975 0.22 +0.1
259,212 - RR42_RS21975 0.22 +1.3

Or see this region's nucleotide sequence