Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21640 and RR42_RS21645 overlap by 8 nucleotides RR42_RS21645 and RR42_RS21650 are separated by 43 nucleotides RR42_RS21650 and RR42_RS21655 are separated by 162 nucleotides
RR42_RS21640: RR42_RS21640 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 184,358 to 185,458
_RS21640
RR42_RS21645: RR42_RS21645 - N-carbamoylsarcosine amidase, at 185,451 to 186,092
_RS21645
RR42_RS21650: RR42_RS21650 - TetR family transcriptional regulator, at 186,136 to 186,873
_RS21650
RR42_RS21655: RR42_RS21655 - aldehyde dehydrogenase, at 187,036 to 189,300
_RS21655
Position (kb) 186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.201 kb on + strand, within RR42_RS21640 at 185.202 kb on - strand, within RR42_RS21640 at 185.202 kb on - strand, within RR42_RS21640 at 185.393 kb on + strand at 185.518 kb on - strand at 186.090 kb on + strand at 186.243 kb on + strand, within RR42_RS21650 at 186.318 kb on + strand, within RR42_RS21650 at 186.318 kb on + strand, within RR42_RS21650 at 186.319 kb on - strand, within RR42_RS21650 at 186.336 kb on - strand, within RR42_RS21650 at 186.366 kb on - strand, within RR42_RS21650 at 186.366 kb on - strand, within RR42_RS21650 at 186.449 kb on + strand, within RR42_RS21650 at 186.449 kb on + strand, within RR42_RS21650 at 186.548 kb on + strand, within RR42_RS21650 at 186.549 kb on - strand, within RR42_RS21650 at 186.551 kb on + strand, within RR42_RS21650 at 186.551 kb on + strand, within RR42_RS21650 at 186.552 kb on - strand, within RR42_RS21650 at 186.644 kb on + strand, within RR42_RS21650 at 186.644 kb on + strand, within RR42_RS21650 at 186.644 kb on + strand, within RR42_RS21650 at 186.692 kb on + strand, within RR42_RS21650 at 186.693 kb on - strand, within RR42_RS21650 at 186.693 kb on - strand, within RR42_RS21650 at 186.695 kb on + strand, within RR42_RS21650 at 186.698 kb on + strand, within RR42_RS21650 at 186.698 kb on + strand, within RR42_RS21650 at 186.698 kb on + strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.873 kb on + strand at 186.873 kb on + strand at 186.873 kb on + strand at 186.874 kb on - strand at 186.883 kb on - strand at 186.883 kb on - strand at 186.886 kb on + strand at 186.886 kb on + strand at 186.887 kb on - strand at 186.910 kb on - strand at 186.910 kb on - strand at 186.911 kb on + strand at 187.531 kb on + strand, within RR42_RS21655 at 187.641 kb on + strand, within RR42_RS21655 at 187.729 kb on + strand, within RR42_RS21655 at 187.730 kb on - strand, within RR42_RS21655
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 185,201 + RR42_RS21640 0.77 -1.2 185,202 - RR42_RS21640 0.77 -1.7 185,202 - RR42_RS21640 0.77 -1.2 185,393 + +1.0 185,518 - +1.8 186,090 + -0.0 186,243 + RR42_RS21650 0.14 -0.6 186,318 + RR42_RS21650 0.25 -1.7 186,318 + RR42_RS21650 0.25 -1.7 186,319 - RR42_RS21650 0.25 -1.1 186,336 - RR42_RS21650 0.27 -1.8 186,366 - RR42_RS21650 0.31 -0.4 186,366 - RR42_RS21650 0.31 +0.3 186,449 + RR42_RS21650 0.42 +0.0 186,449 + RR42_RS21650 0.42 +0.6 186,548 + RR42_RS21650 0.56 -0.3 186,549 - RR42_RS21650 0.56 -1.7 186,551 + RR42_RS21650 0.56 +0.0 186,551 + RR42_RS21650 0.56 -3.1 186,552 - RR42_RS21650 0.56 -0.3 186,644 + RR42_RS21650 0.69 +0.1 186,644 + RR42_RS21650 0.69 -0.0 186,644 + RR42_RS21650 0.69 +1.9 186,692 + RR42_RS21650 0.75 -1.1 186,693 - RR42_RS21650 0.75 +2.3 186,693 - RR42_RS21650 0.75 -0.1 186,695 + RR42_RS21650 0.76 +0.3 186,698 + RR42_RS21650 0.76 -1.7 186,698 + RR42_RS21650 0.76 -1.2 186,698 + RR42_RS21650 0.76 +0.3 186,699 - RR42_RS21650 0.76 -1.3 186,699 - RR42_RS21650 0.76 +0.5 186,699 - RR42_RS21650 0.76 -2.5 186,699 - RR42_RS21650 0.76 -0.7 186,699 - RR42_RS21650 0.76 -1.2 186,873 + +0.3 186,873 + +0.7 186,873 + -0.5 186,874 - +1.2 186,883 - -0.6 186,883 - +0.8 186,886 + -0.2 186,886 + +0.8 186,887 - +0.3 186,910 - -0.5 186,910 - -1.0 186,911 + +0.9 187,531 + RR42_RS21655 0.22 -2.0 187,641 + RR42_RS21655 0.27 +0.4 187,729 + RR42_RS21655 0.31 +0.3 187,730 - RR42_RS21655 0.31 -0.0
Or see this region's nucleotide sequence