Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21405

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21395 and RR42_RS21400 are separated by 124 nucleotidesRR42_RS21400 and RR42_RS21405 are separated by 102 nucleotides RR42_RS21395: RR42_RS21395 - MFS transporter, at 129,834 to 130,835 _RS21395 RR42_RS21400: RR42_RS21400 - prolyl-tRNA synthetase, at 130,960 to 131,433 _RS21400 RR42_RS21405: RR42_RS21405 - LysR family transcriptional regulator, at 131,536 to 132,486 _RS21405 Position (kb) 131 132 133Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 130.618 kb on - strand, within RR42_RS21395at 130.774 kb on + strandat 130.775 kb on - strandat 130.775 kb on - strandat 130.775 kb on - strandat 130.911 kb on + strandat 130.962 kb on - strandat 130.962 kb on - strandat 130.962 kb on - strandat 131.102 kb on + strand, within RR42_RS21400at 131.106 kb on + strand, within RR42_RS21400at 131.106 kb on + strand, within RR42_RS21400at 131.106 kb on + strand, within RR42_RS21400at 131.106 kb on + strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.107 kb on - strand, within RR42_RS21400at 131.266 kb on + strand, within RR42_RS21400at 131.266 kb on + strand, within RR42_RS21400at 131.267 kb on - strand, within RR42_RS21400at 131.270 kb on + strand, within RR42_RS21400at 131.271 kb on - strand, within RR42_RS21400at 131.360 kb on + strand, within RR42_RS21400at 131.361 kb on - strand, within RR42_RS21400at 131.361 kb on - strand, within RR42_RS21400at 131.452 kb on + strandat 131.453 kb on - strandat 131.453 kb on - strandat 131.491 kb on + strandat 131.494 kb on + strandat 131.494 kb on + strandat 131.494 kb on + strandat 131.495 kb on - strandat 131.495 kb on - strandat 131.496 kb on + strandat 131.496 kb on + strandat 131.497 kb on - strandat 131.645 kb on + strand, within RR42_RS21405at 131.668 kb on - strand, within RR42_RS21405at 131.668 kb on - strand, within RR42_RS21405at 131.668 kb on - strand, within RR42_RS21405at 131.669 kb on + strand, within RR42_RS21405at 131.669 kb on + strand, within RR42_RS21405at 131.669 kb on + strand, within RR42_RS21405at 131.669 kb on + strand, within RR42_RS21405at 131.669 kb on + strand, within RR42_RS21405at 131.669 kb on + strand, within RR42_RS21405at 131.670 kb on - strand, within RR42_RS21405at 131.670 kb on - strand, within RR42_RS21405at 131.670 kb on - strand, within RR42_RS21405at 131.670 kb on - strand, within RR42_RS21405at 131.700 kb on - strand, within RR42_RS21405at 131.753 kb on + strand, within RR42_RS21405at 131.754 kb on - strand, within RR42_RS21405at 131.754 kb on - strand, within RR42_RS21405at 131.754 kb on - strand, within RR42_RS21405at 131.979 kb on - strand, within RR42_RS21405at 132.137 kb on + strand, within RR42_RS21405at 132.193 kb on - strand, within RR42_RS21405at 132.386 kb on + strand, within RR42_RS21405at 132.386 kb on + strand, within RR42_RS21405at 132.387 kb on - strand, within RR42_RS21405at 132.387 kb on - strand, within RR42_RS21405at 132.519 kb on - strandat 132.556 kb on + strandat 132.557 kb on - strandat 132.557 kb on - strandat 132.610 kb on + strandat 132.610 kb on + strandat 132.611 kb on - strandat 132.611 kb on - strandat 132.683 kb on + strandat 132.684 kb on - strandat 132.684 kb on - strandat 132.706 kb on + strandat 132.707 kb on - strandat 132.831 kb on + strandat 132.860 kb on + strandat 132.861 kb on - strandat 132.928 kb on + strandat 132.929 kb on - strandat 132.929 kb on - strandat 133.070 kb on + strandat 133.229 kb on + strandat 133.230 kb on - strandat 133.275 kb on + strandat 133.275 kb on + strandat 133.407 kb on + strandat 133.407 kb on + strandat 133.407 kb on + strandat 133.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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130,618 - RR42_RS21395 0.78 +0.3
130,774 + +0.1
130,775 - +1.7
130,775 - +0.2
130,775 - -1.6
130,911 + -0.1
130,962 - -2.0
130,962 - +0.7
130,962 - -0.0
131,102 + RR42_RS21400 0.30 -1.7
131,106 + RR42_RS21400 0.31 +2.2
131,106 + RR42_RS21400 0.31 -0.3
131,106 + RR42_RS21400 0.31 +0.5
131,106 + RR42_RS21400 0.31 +0.1
131,107 - RR42_RS21400 0.31 -0.6
131,107 - RR42_RS21400 0.31 +0.1
131,107 - RR42_RS21400 0.31 -0.7
131,107 - RR42_RS21400 0.31 +0.7
131,107 - RR42_RS21400 0.31 -1.6
131,107 - RR42_RS21400 0.31 +1.3
131,107 - RR42_RS21400 0.31 +0.4
131,107 - RR42_RS21400 0.31 +0.9
131,266 + RR42_RS21400 0.65 -0.5
131,266 + RR42_RS21400 0.65 +0.1
131,267 - RR42_RS21400 0.65 -0.6
131,270 + RR42_RS21400 0.65 -0.2
131,271 - RR42_RS21400 0.66 -0.4
131,360 + RR42_RS21400 0.84 -0.4
131,361 - RR42_RS21400 0.85 -0.2
131,361 - RR42_RS21400 0.85 -0.6
131,452 + -0.6
131,453 - -0.3
131,453 - +1.3
131,491 + -2.2
131,494 + +0.6
131,494 + +0.3
131,494 + -0.5
131,495 - +0.1
131,495 - -0.1
131,496 + -0.2
131,496 + -1.2
131,497 - +0.5
131,645 + RR42_RS21405 0.11 -0.5
131,668 - RR42_RS21405 0.14 -1.1
131,668 - RR42_RS21405 0.14 +1.1
131,668 - RR42_RS21405 0.14 -3.0
131,669 + RR42_RS21405 0.14 -0.6
131,669 + RR42_RS21405 0.14 +0.6
131,669 + RR42_RS21405 0.14 -0.2
131,669 + RR42_RS21405 0.14 -0.8
131,669 + RR42_RS21405 0.14 -0.6
131,669 + RR42_RS21405 0.14 -1.4
131,670 - RR42_RS21405 0.14 -0.4
131,670 - RR42_RS21405 0.14 -0.9
131,670 - RR42_RS21405 0.14 -0.9
131,670 - RR42_RS21405 0.14 -0.3
131,700 - RR42_RS21405 0.17 -1.5
131,753 + RR42_RS21405 0.23 -1.2
131,754 - RR42_RS21405 0.23 -0.5
131,754 - RR42_RS21405 0.23 +0.7
131,754 - RR42_RS21405 0.23 -0.3
131,979 - RR42_RS21405 0.47 +0.8
132,137 + RR42_RS21405 0.63 -0.5
132,193 - RR42_RS21405 0.69 -1.1
132,386 + RR42_RS21405 0.89 +0.4
132,386 + RR42_RS21405 0.89 -1.5
132,387 - RR42_RS21405 0.89 -1.5
132,387 - RR42_RS21405 0.89 -1.7
132,519 - -1.3
132,556 + +1.4
132,557 - -0.9
132,557 - -0.2
132,610 + -0.7
132,610 + -0.4
132,611 - +0.1
132,611 - +0.2
132,683 + -1.0
132,684 - +0.8
132,684 - +1.4
132,706 + +1.3
132,707 - -1.0
132,831 + -0.2
132,860 + -1.2
132,861 - +0.2
132,928 + -1.6
132,929 - -0.4
132,929 - -1.7
133,070 + -2.0
133,229 + -0.5
133,230 - +0.6
133,275 + -0.0
133,275 + -1.5
133,407 + +0.9
133,407 + -0.4
133,407 + -0.4
133,408 - -2.6

Or see this region's nucleotide sequence