Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20885

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20875 and RR42_RS20880 are separated by 337 nucleotidesRR42_RS20880 and RR42_RS20885 are separated by 99 nucleotidesRR42_RS20885 and RR42_RS20890 are separated by 688 nucleotides RR42_RS20875: RR42_RS20875 - LuxR family transcriptional regulator, at 7,230 to 8,090 _RS20875 RR42_RS20880: RR42_RS20880 - hypothetical protein, at 8,428 to 8,877 _RS20880 RR42_RS20885: RR42_RS20885 - hypothetical protein, at 8,977 to 9,243 _RS20885 RR42_RS20890: RR42_RS20890 - phosphatase, at 9,932 to 10,600 _RS20890 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2at 8.096 kb on - strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.310 kb on - strandat 8.325 kb on - strandat 8.325 kb on - strandat 8.383 kb on - strandat 8.561 kb on + strand, within RR42_RS20880at 8.562 kb on - strand, within RR42_RS20880at 8.707 kb on + strand, within RR42_RS20880at 8.707 kb on + strand, within RR42_RS20880at 8.864 kb on - strandat 8.900 kb on + strandat 8.901 kb on - strandat 9.094 kb on + strand, within RR42_RS20885at 9.095 kb on - strand, within RR42_RS20885at 9.122 kb on - strand, within RR42_RS20885at 9.154 kb on - strand, within RR42_RS20885at 9.154 kb on - strand, within RR42_RS20885at 9.227 kb on - strandat 9.286 kb on + strandat 9.361 kb on + strandat 9.362 kb on - strandat 9.362 kb on - strandat 9.681 kb on - strandat 9.698 kb on - strandat 9.897 kb on - strandat 9.949 kb on + strandat 9.949 kb on + strandat 9.950 kb on - strandat 9.950 kb on - strandat 10.157 kb on - strand, within RR42_RS20890at 10.194 kb on - strand, within RR42_RS20890

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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8,096 - +0.3
8,211 + -0.0
8,211 + +0.7
8,310 - -1.7
8,325 - -1.0
8,325 - +0.2
8,383 - +0.5
8,561 + RR42_RS20880 0.30 +1.5
8,562 - RR42_RS20880 0.30 +0.0
8,707 + RR42_RS20880 0.62 +0.3
8,707 + RR42_RS20880 0.62 +1.1
8,864 - +1.2
8,900 + -0.4
8,901 - +0.1
9,094 + RR42_RS20885 0.44 -1.6
9,095 - RR42_RS20885 0.44 +0.2
9,122 - RR42_RS20885 0.54 -1.7
9,154 - RR42_RS20885 0.66 +0.4
9,154 - RR42_RS20885 0.66 -0.4
9,227 - -0.8
9,286 + +0.0
9,361 + +1.2
9,362 - -1.8
9,362 - -0.1
9,681 - +0.7
9,698 - -1.4
9,897 - +0.1
9,949 + +0.6
9,949 + +1.9
9,950 - +0.5
9,950 - +0.1
10,157 - RR42_RS20890 0.34 -0.9
10,194 - RR42_RS20890 0.39 -0.0

Or see this region's nucleotide sequence