Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20540

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
4,451,148	-		RR42_RS20535	0.15	+0.5
4,451,255	+		RR42_RS20535	0.26	+2.3
4,451,256	-		RR42_RS20535	0.26	+1.2
4,451,256	-		RR42_RS20535	0.26	+0.7
4,451,358	+		RR42_RS20535	0.36	+2.0
4,451,358	+		RR42_RS20535	0.36	-1.1
4,451,359	-		RR42_RS20535	0.36	+1.2
4,451,359	-		RR42_RS20535	0.36	+1.1
4,451,858	+		RR42_RS20535	0.85	+1.3
4,451,858	+		RR42_RS20535	0.85	+0.9
4,451,859	-		RR42_RS20535	0.86	+0.7
4,451,880	+		RR42_RS20535	0.88	+1.9
4,451,881	-		RR42_RS20535	0.88	+0.5
4,451,898	+		RR42_RS20535	0.89	-0.6
4,451,898	+		RR42_RS20535	0.89	+1.9
4,451,899	-		RR42_RS20535	0.89	+0.5
4,451,907	+				+0.6
4,451,907	+				+0.7
4,451,907	+				-0.0
4,451,907	+				+1.7
4,451,907	+				+1.2
4,451,907	+				+1.9
4,451,908	-				+1.6
4,452,045	+				-0.1
4,452,046	-				-0.5
4,452,118	+				-1.4
4,452,119	-				+0.2
4,452,119	-				+0.5
4,452,328	+		RR42_RS20540	0.15	-0.2
4,452,328	+		RR42_RS20540	0.15	-0.1
4,452,328	+		RR42_RS20540	0.15	+0.5
4,452,329	-		RR42_RS20540	0.15	+1.5
4,452,329	-		RR42_RS20540	0.15	-0.4
4,452,379	-		RR42_RS20540	0.20	-0.1
4,452,379	-		RR42_RS20540	0.20	+0.9
4,452,379	-		RR42_RS20540	0.20	+0.6
4,452,693	+		RR42_RS20540	0.46	-0.9
4,452,693	+		RR42_RS20540	0.46	+0.8
4,452,693	+		RR42_RS20540	0.46	+1.1
4,452,693	+		RR42_RS20540	0.46	+0.9
4,452,694	-		RR42_RS20540	0.47	+0.7
4,452,694	-		RR42_RS20540	0.47	+1.0
4,452,694	-		RR42_RS20540	0.47	+1.2
4,452,694	-		RR42_RS20540	0.47	-1.1
4,452,694	-		RR42_RS20540	0.47	+1.7
4,452,694	-		RR42_RS20540	0.47	+0.5
4,452,803	+		RR42_RS20540	0.56	-0.1
4,452,804	-		RR42_RS20540	0.56	+0.1
4,452,804	-		RR42_RS20540	0.56	-1.3
4,452,807	+		RR42_RS20540	0.56	+1.8
4,452,807	+		RR42_RS20540	0.56	+0.6
4,452,807	+		RR42_RS20540	0.56	-0.5
4,452,807	+		RR42_RS20540	0.56	+0.2
4,452,808	-		RR42_RS20540	0.56	+1.1
4,452,808	-		RR42_RS20540	0.56	+0.1
4,452,809	+		RR42_RS20540	0.56	-0.7
4,452,809	+		RR42_RS20540	0.56	-0.3
4,452,809	+		RR42_RS20540	0.56	-0.5
4,452,809	+		RR42_RS20540	0.56	+1.0
4,452,809	+		RR42_RS20540	0.56	+1.2
4,452,809	+		RR42_RS20540	0.56	+0.5
4,452,810	-		RR42_RS20540	0.56	-0.5
4,452,810	-		RR42_RS20540	0.56	+0.4
4,452,810	-		RR42_RS20540	0.56	-1.1
4,452,810	-		RR42_RS20540	0.56	+0.1
4,452,810	-		RR42_RS20540	0.56	+0.5
4,452,810	-		RR42_RS20540	0.56	-1.5
4,452,810	-		RR42_RS20540	0.56	+1.3
4,452,810	-		RR42_RS20540	0.56	-0.4
4,452,810	-		RR42_RS20540	0.56	-1.3
4,452,810	-		RR42_RS20540	0.56	-0.6
4,452,810	-		RR42_RS20540	0.56	-0.3
4,453,146	+		RR42_RS20540	0.85	+0.6
4,453,146	+		RR42_RS20540	0.85	-0.4
4,453,146	+		RR42_RS20540	0.85	+1.8
4,453,146	+		RR42_RS20540	0.85	-0.2
4,453,147	-		RR42_RS20540	0.85	-2.0
4,453,188	+		RR42_RS20540	0.89	-0.3
4,453,188	+		RR42_RS20540	0.89	+0.5
4,453,188	+		RR42_RS20540	0.89	-0.0
4,453,189	-		RR42_RS20540	0.89	+1.1
4,453,189	-		RR42_RS20540	0.89	-0.5
4,453,189	-		RR42_RS20540	0.89	+0.1
4,453,394	+				-0.5
4,453,394	+				-2.8
4,453,394	+				+1.2
4,453,395	-				-1.0
4,453,395	-				-0.9
4,453,460	-				-0.2
4,453,460	-				-3.0
4,453,460	-				+1.8
4,453,460	-				+1.5
4,453,460	-				-0.7
4,453,460	-				-0.2
4,453,674	+		RR42_RS20545	0.35	+0.8
4,453,674	+		RR42_RS20545	0.35	+0.4
4,453,674	+		RR42_RS20545	0.35	+0.5
4,453,675	-		RR42_RS20545	0.35	-1.2
4,453,675	-		RR42_RS20545	0.35	-1.6
4,453,680	+		RR42_RS20545	0.36	+0.3
4,453,695	+		RR42_RS20545	0.39	-1.5
4,453,695	+		RR42_RS20545	0.39	-1.7
4,453,695	+		RR42_RS20545	0.39	-0.1
4,453,695	+		RR42_RS20545	0.39	+0.1
4,453,696	-		RR42_RS20545	0.39	-0.1
4,453,696	-		RR42_RS20545	0.39	+0.2
4,453,696	-		RR42_RS20545	0.39	+0.1
4,453,696	-		RR42_RS20545	0.39	-0.8
4,453,878	+		RR42_RS20545	0.68	-0.5
4,453,879	-		RR42_RS20545	0.68	+0.1
4,453,922	+		RR42_RS20545	0.75	-0.1
4,453,922	+		RR42_RS20545	0.75	-1.4
4,453,922	+		RR42_RS20545	0.75	+0.4
4,453,923	-		RR42_RS20545	0.75	+0.1
4,453,923	-		RR42_RS20545	0.75	+0.8
4,453,923	-		RR42_RS20545	0.75	+0.4
4,453,923	-		RR42_RS20545	0.75	+0.1
4,453,923	-		RR42_RS20545	0.75	+0.5
4,453,923	-		RR42_RS20545	0.75	+0.4
4,453,923	-		RR42_RS20545	0.75	-0.4
4,453,950	+		RR42_RS20545	0.79	-0.9
4,453,951	-		RR42_RS20545	0.79	+0.0
4,454,083	-				-0.8
4,454,123	+				-0.9
4,454,126	+				+0.8
4,454,126	+				-1.3
4,454,126	+				+0.3
4,454,126	+				+0.6
4,454,126	+				+1.3
4,454,127	-				-1.1
4,454,127	-				-2.0
4,454,127	-				-1.7
4,454,127	-				-0.0
4,454,127	-				+0.2
4,454,133	+				-1.0
4,454,134	-				-1.3
4,454,181	+				+0.5
4,454,182	-				-0.5
4,454,184	+				+0.3
4,454,184	+				+0.9
4,454,184	+				+0.3
4,454,184	+				+0.7
4,454,184	+				+0.5
4,454,185	-				-0.3
4,454,185	-				+0.7
4,454,185	-				+0.2
4,454,185	-				-1.1
4,454,185	-				-0.4
4,454,187	+				+0.7
4,454,188	-				-0.1
4,454,264	+				+0.6
4,454,264	+				+0.6
4,454,265	-				+1.1
4,454,265	-				-0.3