Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20060 and RR42_RS20065 are separated by 102 nucleotides RR42_RS20065 and RR42_RS20070 are separated by 101 nucleotides RR42_RS20070 and RR42_RS20075 are separated by 113 nucleotides RR42_RS20075 and RR42_RS20080 are separated by 31 nucleotides
RR42_RS20060: RR42_RS20060 - glycine cleavage system protein T, at 4,334,296 to 4,335,435
_RS20060
RR42_RS20065: RR42_RS20065 - glycine cleavage system protein H, at 4,335,538 to 4,335,918
_RS20065
RR42_RS20070: RR42_RS20070 - glycine dehydrogenase, at 4,336,020 to 4,338,941
_RS20070
RR42_RS20075: RR42_RS20075 - hypothetical protein, at 4,339,055 to 4,339,597
_RS20075
RR42_RS20080: RR42_RS20080 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 4,339,629 to 4,341,005
_RS20080
Position (kb) 4336
4337
4338
4339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4335.047 kb on - strand, within RR42_RS20060 at 4335.394 kb on - strand at 4335.562 kb on + strand at 4335.562 kb on + strand at 4335.563 kb on - strand at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.745 kb on + strand, within RR42_RS20065 at 4335.746 kb on - strand, within RR42_RS20065 at 4335.895 kb on + strand at 4335.895 kb on + strand at 4335.895 kb on + strand at 4335.895 kb on + strand at 4335.896 kb on - strand at 4335.897 kb on + strand at 4335.897 kb on + strand at 4335.897 kb on + strand at 4336.330 kb on - strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.332 kb on + strand, within RR42_RS20070 at 4336.333 kb on - strand, within RR42_RS20070 at 4336.333 kb on - strand, within RR42_RS20070 at 4336.333 kb on - strand, within RR42_RS20070 at 4336.390 kb on - strand, within RR42_RS20070 at 4336.399 kb on - strand, within RR42_RS20070 at 4336.581 kb on + strand, within RR42_RS20070 at 4336.581 kb on + strand, within RR42_RS20070 at 4336.582 kb on - strand, within RR42_RS20070 at 4336.621 kb on + strand, within RR42_RS20070 at 4336.914 kb on + strand, within RR42_RS20070 at 4336.915 kb on - strand, within RR42_RS20070 at 4336.915 kb on - strand, within RR42_RS20070 at 4336.998 kb on + strand, within RR42_RS20070 at 4337.030 kb on + strand, within RR42_RS20070 at 4337.030 kb on + strand, within RR42_RS20070 at 4337.031 kb on - strand, within RR42_RS20070 at 4337.063 kb on + strand, within RR42_RS20070 at 4337.063 kb on + strand, within RR42_RS20070 at 4337.064 kb on - strand, within RR42_RS20070 at 4337.064 kb on - strand, within RR42_RS20070 at 4337.064 kb on - strand, within RR42_RS20070 at 4337.100 kb on + strand, within RR42_RS20070 at 4337.100 kb on + strand, within RR42_RS20070 at 4337.100 kb on + strand, within RR42_RS20070 at 4337.101 kb on - strand, within RR42_RS20070 at 4337.109 kb on + strand, within RR42_RS20070 at 4337.109 kb on + strand, within RR42_RS20070 at 4337.110 kb on - strand, within RR42_RS20070 at 4337.110 kb on - strand, within RR42_RS20070 at 4337.196 kb on + strand, within RR42_RS20070 at 4337.197 kb on - strand, within RR42_RS20070 at 4337.470 kb on - strand, within RR42_RS20070 at 4337.470 kb on - strand, within RR42_RS20070 at 4337.523 kb on + strand, within RR42_RS20070 at 4337.523 kb on + strand, within RR42_RS20070 at 4338.009 kb on + strand, within RR42_RS20070 at 4338.009 kb on + strand, within RR42_RS20070 at 4338.010 kb on - strand, within RR42_RS20070 at 4338.010 kb on - strand, within RR42_RS20070 at 4338.010 kb on - strand, within RR42_RS20070 at 4338.017 kb on + strand, within RR42_RS20070 at 4338.029 kb on - strand, within RR42_RS20070 at 4338.029 kb on - strand, within RR42_RS20070 at 4338.087 kb on + strand, within RR42_RS20070 at 4338.088 kb on - strand, within RR42_RS20070 at 4338.357 kb on + strand, within RR42_RS20070 at 4338.357 kb on + strand, within RR42_RS20070 at 4338.358 kb on - strand, within RR42_RS20070 at 4338.358 kb on - strand, within RR42_RS20070 at 4338.358 kb on - strand, within RR42_RS20070 at 4338.358 kb on - strand, within RR42_RS20070 at 4338.358 kb on - strand, within RR42_RS20070 at 4338.423 kb on + strand, within RR42_RS20070 at 4338.424 kb on - strand, within RR42_RS20070 at 4338.424 kb on - strand, within RR42_RS20070 at 4338.424 kb on - strand, within RR42_RS20070 at 4338.424 kb on - strand, within RR42_RS20070 at 4338.424 kb on - strand, within RR42_RS20070 at 4338.424 kb on - strand, within RR42_RS20070 at 4338.508 kb on + strand, within RR42_RS20070 at 4338.508 kb on + strand, within RR42_RS20070 at 4338.570 kb on + strand, within RR42_RS20070 at 4338.570 kb on + strand, within RR42_RS20070 at 4338.665 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.799 kb on - strand at 4338.799 kb on - strand at 4338.850 kb on - strand at 4338.882 kb on + strand at 4338.927 kb on + strand at 4338.927 kb on + strand at 4338.928 kb on - strand at 4338.939 kb on + strand at 4338.939 kb on + strand at 4338.940 kb on - strand at 4339.165 kb on + strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.353 kb on + strand, within RR42_RS20075 at 4339.353 kb on + strand, within RR42_RS20075 at 4339.354 kb on - strand, within RR42_RS20075 at 4339.625 kb on + strand at 4339.779 kb on + strand, within RR42_RS20080 at 4339.779 kb on + strand, within RR42_RS20080 at 4339.779 kb on + strand, within RR42_RS20080 at 4339.780 kb on - strand, within RR42_RS20080 at 4339.780 kb on - strand, within RR42_RS20080 at 4339.780 kb on - strand, within RR42_RS20080
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 4,335,047 - RR42_RS20060 0.66 -1.7 4,335,394 - -1.3 4,335,562 + -0.5 4,335,562 + +0.6 4,335,563 - +0.1 4,335,745 + RR42_RS20065 0.54 -1.7 4,335,745 + RR42_RS20065 0.54 -2.0 4,335,745 + RR42_RS20065 0.54 -1.3 4,335,745 + RR42_RS20065 0.54 -1.5 4,335,745 + RR42_RS20065 0.54 -0.4 4,335,746 - RR42_RS20065 0.55 -1.1 4,335,895 + -0.9 4,335,895 + +0.5 4,335,895 + -1.6 4,335,895 + +1.1 4,335,896 - -0.1 4,335,897 + -0.9 4,335,897 + -1.3 4,335,897 + +0.1 4,336,330 - RR42_RS20070 0.11 +0.8 4,336,332 + RR42_RS20070 0.11 +1.1 4,336,332 + RR42_RS20070 0.11 -0.1 4,336,332 + RR42_RS20070 0.11 +1.0 4,336,332 + RR42_RS20070 0.11 +0.2 4,336,332 + RR42_RS20070 0.11 +1.5 4,336,332 + RR42_RS20070 0.11 +0.3 4,336,333 - RR42_RS20070 0.11 +0.1 4,336,333 - RR42_RS20070 0.11 -0.9 4,336,333 - RR42_RS20070 0.11 -1.8 4,336,390 - RR42_RS20070 0.13 -1.5 4,336,399 - RR42_RS20070 0.13 +0.1 4,336,581 + RR42_RS20070 0.19 +0.2 4,336,581 + RR42_RS20070 0.19 +0.8 4,336,582 - RR42_RS20070 0.19 -1.3 4,336,621 + RR42_RS20070 0.21 -0.9 4,336,914 + RR42_RS20070 0.31 +1.2 4,336,915 - RR42_RS20070 0.31 +0.4 4,336,915 - RR42_RS20070 0.31 -0.2 4,336,998 + RR42_RS20070 0.33 -0.4 4,337,030 + RR42_RS20070 0.35 +0.5 4,337,030 + RR42_RS20070 0.35 +0.5 4,337,031 - RR42_RS20070 0.35 -0.0 4,337,063 + RR42_RS20070 0.36 +0.5 4,337,063 + RR42_RS20070 0.36 -0.9 4,337,064 - RR42_RS20070 0.36 +0.4 4,337,064 - RR42_RS20070 0.36 +2.1 4,337,064 - RR42_RS20070 0.36 +0.7 4,337,100 + RR42_RS20070 0.37 +1.1 4,337,100 + RR42_RS20070 0.37 +0.5 4,337,100 + RR42_RS20070 0.37 +0.5 4,337,101 - RR42_RS20070 0.37 +1.4 4,337,109 + RR42_RS20070 0.37 +0.5 4,337,109 + RR42_RS20070 0.37 +0.9 4,337,110 - RR42_RS20070 0.37 +1.1 4,337,110 - RR42_RS20070 0.37 -0.4 4,337,196 + RR42_RS20070 0.40 -2.7 4,337,197 - RR42_RS20070 0.40 -0.0 4,337,470 - RR42_RS20070 0.50 -0.8 4,337,470 - RR42_RS20070 0.50 +0.7 4,337,523 + RR42_RS20070 0.51 +0.3 4,337,523 + RR42_RS20070 0.51 +0.5 4,338,009 + RR42_RS20070 0.68 +1.5 4,338,009 + RR42_RS20070 0.68 +1.0 4,338,010 - RR42_RS20070 0.68 -0.9 4,338,010 - RR42_RS20070 0.68 +0.4 4,338,010 - RR42_RS20070 0.68 -0.6 4,338,017 + RR42_RS20070 0.68 -1.7 4,338,029 - RR42_RS20070 0.69 -0.8 4,338,029 - RR42_RS20070 0.69 +0.5 4,338,087 + RR42_RS20070 0.71 +0.5 4,338,088 - RR42_RS20070 0.71 -0.2 4,338,357 + RR42_RS20070 0.80 +1.5 4,338,357 + RR42_RS20070 0.80 +0.6 4,338,358 - RR42_RS20070 0.80 +2.5 4,338,358 - RR42_RS20070 0.80 -0.4 4,338,358 - RR42_RS20070 0.80 +0.1 4,338,358 - RR42_RS20070 0.80 +1.4 4,338,358 - RR42_RS20070 0.80 +0.3 4,338,423 + RR42_RS20070 0.82 +2.1 4,338,424 - RR42_RS20070 0.82 -0.5 4,338,424 - RR42_RS20070 0.82 +0.5 4,338,424 - RR42_RS20070 0.82 -1.0 4,338,424 - RR42_RS20070 0.82 +0.6 4,338,424 - RR42_RS20070 0.82 +1.5 4,338,424 - RR42_RS20070 0.82 -0.9 4,338,508 + RR42_RS20070 0.85 -0.9 4,338,508 + RR42_RS20070 0.85 +2.5 4,338,570 + RR42_RS20070 0.87 -3.2 4,338,570 + RR42_RS20070 0.87 -0.0 4,338,665 + -0.9 4,338,798 + +0.7 4,338,798 + -2.0 4,338,798 + -0.4 4,338,798 + +1.1 4,338,798 + +0.5 4,338,799 - +0.3 4,338,799 - -1.4 4,338,850 - +1.7 4,338,882 + -1.9 4,338,927 + +0.3 4,338,927 + +0.1 4,338,928 - -1.4 4,338,939 + +0.5 4,338,939 + +0.7 4,338,940 - -1.3 4,339,165 + RR42_RS20075 0.20 -0.6 4,339,166 - RR42_RS20075 0.20 -2.3 4,339,166 - RR42_RS20075 0.20 -0.6 4,339,166 - RR42_RS20075 0.20 +0.7 4,339,166 - RR42_RS20075 0.20 -0.1 4,339,353 + RR42_RS20075 0.55 -0.7 4,339,353 + RR42_RS20075 0.55 +0.5 4,339,354 - RR42_RS20075 0.55 -1.1 4,339,625 + -1.7 4,339,779 + RR42_RS20080 0.11 -1.7 4,339,779 + RR42_RS20080 0.11 +0.7 4,339,779 + RR42_RS20080 0.11 -0.2 4,339,780 - RR42_RS20080 0.11 +0.1 4,339,780 - RR42_RS20080 0.11 -0.2 4,339,780 - RR42_RS20080 0.11 -0.2
Or see this region's nucleotide sequence