Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18245

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18230 and RR42_RS18235 are separated by 295 nucleotidesRR42_RS18235 and RR42_RS18240 are separated by 48 nucleotidesRR42_RS18240 and RR42_RS18245 are separated by 21 nucleotidesRR42_RS18245 and RR42_RS18250 are separated by 558 nucleotides RR42_RS18230: RR42_RS18230 - 23S ribosomal RNA, at 3,949,956 to 3,952,857 _RS18230 RR42_RS18235: RR42_RS18235 - tRNA-Ala, at 3,953,153 to 3,953,228 _RS18235 RR42_RS18240: RR42_RS18240 - tRNA-Ile, at 3,953,277 to 3,953,353 _RS18240 RR42_RS18245: RR42_RS18245 - 16S ribosomal RNA, at 3,953,375 to 3,954,949 _RS18245 RR42_RS18250: RR42_RS18250 - enoyl-CoA hydratase, at 3,955,508 to 3,956,284 _RS18250 Position (kb) 3953 3954 3955Strain fitness (log2 ratio) -1 0 1at 3955.450 kb on - strandat 3955.499 kb on + strandat 3955.499 kb on + strandat 3955.499 kb on + strandat 3955.500 kb on - strandat 3955.510 kb on - strandat 3955.638 kb on + strand, within RR42_RS18250

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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3,955,450 - -0.2
3,955,499 + -1.2
3,955,499 + +0.1
3,955,499 + -1.2
3,955,500 - -1.3
3,955,510 - +1.4
3,955,638 + RR42_RS18250 0.17 -0.6

Or see this region's nucleotide sequence