Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16505 and RR42_RS16510 are separated by 242 nucleotides RR42_RS16510 and RR42_RS16515 are separated by 403 nucleotides RR42_RS16515 and RR42_RS16520 are separated by 206 nucleotides RR42_RS16520 and RR42_RS16525 overlap by 1 nucleotides
RR42_RS16505: RR42_RS16505 - adenylate cyclase, at 3,576,280 to 3,577,935
_RS16505
RR42_RS16510: RR42_RS16510 - hypothetical protein, at 3,578,178 to 3,578,396
_RS16510
RR42_RS16515: RR42_RS16515 - hypothetical protein, at 3,578,800 to 3,579,102
_RS16515
RR42_RS16520: RR42_RS16520 - RNA polymerase sigma factor, at 3,579,309 to 3,579,848
_RS16520
RR42_RS16525: RR42_RS16525 - anti-sigma factor, at 3,579,848 to 3,580,633
_RS16525
Position (kb)
3578
3579
3580 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3577.854 kb on + strand at 3577.854 kb on + strand at 3577.854 kb on + strand at 3577.893 kb on - strand at 3577.893 kb on - strand at 3577.893 kb on - strand at 3577.893 kb on - strand at 3577.897 kb on - strand at 3577.914 kb on + strand at 3578.180 kb on - strand at 3578.297 kb on + strand, within RR42_RS16510 at 3578.410 kb on + strand at 3578.415 kb on + strand at 3578.527 kb on - strand at 3578.702 kb on - strand at 3578.793 kb on + strand at 3578.794 kb on - strand at 3579.349 kb on + strand at 3579.350 kb on - strand at 3579.360 kb on - strand at 3579.436 kb on - strand, within RR42_RS16520 at 3579.436 kb on - strand, within RR42_RS16520 at 3579.520 kb on - strand, within RR42_RS16520 at 3579.735 kb on + strand, within RR42_RS16520
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 3,577,854 + +1.6 3,577,854 + +0.7 3,577,854 + +0.6 3,577,893 - -0.4 3,577,893 - -1.0 3,577,893 - -0.1 3,577,893 - +0.4 3,577,897 - -3.5 3,577,914 + +0.9 3,578,180 - +0.5 3,578,297 + RR42_RS16510 0.54 +1.4 3,578,410 + +0.6 3,578,415 + -1.3 3,578,527 - -0.7 3,578,702 - -0.7 3,578,793 + +0.9 3,578,794 - -0.1 3,579,349 + +0.5 3,579,350 - -0.0 3,579,360 - -0.6 3,579,436 - RR42_RS16520 0.24 +0.3 3,579,436 - RR42_RS16520 0.24 -0.0 3,579,520 - RR42_RS16520 0.39 -0.7 3,579,735 + RR42_RS16520 0.79 +0.8
Or see this region's nucleotide sequence