Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15765

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15760 and RR42_RS15765 are separated by 85 nucleotidesRR42_RS15765 and RR42_RS15770 are separated by 35 nucleotides RR42_RS15760: RR42_RS15760 - hypothetical protein, at 3,406,094 to 3,407,332 _RS15760 RR42_RS15765: RR42_RS15765 - hypothetical protein, at 3,407,418 to 3,408,353 _RS15765 RR42_RS15770: RR42_RS15770 - hypothetical protein, at 3,408,389 to 3,409,951 _RS15770 Position (kb) 3407 3408 3409Strain fitness (log2 ratio) -1 0 1 2 3at 3407.326 kb on - strandat 3407.326 kb on - strandat 3407.601 kb on - strand, within RR42_RS15765at 3407.608 kb on + strand, within RR42_RS15765at 3407.608 kb on + strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.644 kb on - strand, within RR42_RS15765at 3407.741 kb on - strand, within RR42_RS15765at 3407.741 kb on - strand, within RR42_RS15765at 3407.754 kb on - strand, within RR42_RS15765at 3407.786 kb on - strand, within RR42_RS15765at 3407.880 kb on - strand, within RR42_RS15765at 3407.882 kb on - strand, within RR42_RS15765at 3407.951 kb on + strand, within RR42_RS15765at 3407.959 kb on + strand, within RR42_RS15765at 3408.297 kb on + strandat 3408.304 kb on + strandat 3408.390 kb on + strandat 3408.390 kb on + strandat 3408.390 kb on + strandat 3408.391 kb on - strandat 3408.433 kb on - strandat 3408.645 kb on + strand, within RR42_RS15770at 3408.645 kb on + strand, within RR42_RS15770at 3408.681 kb on + strand, within RR42_RS15770at 3408.681 kb on + strand, within RR42_RS15770at 3408.708 kb on + strand, within RR42_RS15770at 3408.990 kb on + strand, within RR42_RS15770at 3408.990 kb on + strand, within RR42_RS15770at 3409.239 kb on + strand, within RR42_RS15770at 3409.335 kb on + strand, within RR42_RS15770at 3409.335 kb on + strand, within RR42_RS15770

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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3,407,326 - +0.9
3,407,326 - -0.4
3,407,601 - RR42_RS15765 0.20 +1.7
3,407,608 + RR42_RS15765 0.20 +1.4
3,407,608 + RR42_RS15765 0.20 -0.9
3,407,609 - RR42_RS15765 0.20 +1.3
3,407,609 - RR42_RS15765 0.20 +2.4
3,407,609 - RR42_RS15765 0.20 +0.6
3,407,609 - RR42_RS15765 0.20 +1.5
3,407,644 - RR42_RS15765 0.24 +0.9
3,407,741 - RR42_RS15765 0.35 -1.5
3,407,741 - RR42_RS15765 0.35 +1.9
3,407,754 - RR42_RS15765 0.36 +1.9
3,407,786 - RR42_RS15765 0.39 +0.3
3,407,880 - RR42_RS15765 0.49 +2.9
3,407,882 - RR42_RS15765 0.50 +0.3
3,407,951 + RR42_RS15765 0.57 -0.2
3,407,959 + RR42_RS15765 0.58 +0.5
3,408,297 + +0.4
3,408,304 + +1.1
3,408,390 + -0.2
3,408,390 + +1.6
3,408,390 + +2.0
3,408,391 - -1.1
3,408,433 - +0.8
3,408,645 + RR42_RS15770 0.16 -1.1
3,408,645 + RR42_RS15770 0.16 +1.5
3,408,681 + RR42_RS15770 0.19 +0.4
3,408,681 + RR42_RS15770 0.19 -0.8
3,408,708 + RR42_RS15770 0.20 +1.6
3,408,990 + RR42_RS15770 0.38 +0.6
3,408,990 + RR42_RS15770 0.38 +0.9
3,409,239 + RR42_RS15770 0.54 +0.2
3,409,335 + RR42_RS15770 0.61 +0.0
3,409,335 + RR42_RS15770 0.61 +1.8

Or see this region's nucleotide sequence