Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14990
Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Deoxyribonucleic from herring sperm 10 mg/mL |
---|---|---|---|---|---|
remove | |||||
3,239,513 | + | -1.1 | |||
3,239,551 | + | -0.3 | |||
3,239,660 | - | RR42_RS14980 | 0.21 | -1.3 | |
3,239,751 | + | RR42_RS14980 | 0.41 | +0.6 | |
3,239,751 | + | RR42_RS14980 | 0.41 | +0.3 | |
3,239,751 | + | RR42_RS14980 | 0.41 | +1.3 | |
3,239,752 | - | RR42_RS14980 | 0.41 | +0.9 | |
3,240,022 | + | -0.2 | |||
3,240,152 | - | -3.3 | |||
3,240,152 | - | +0.1 | |||
3,240,191 | - | RR42_RS14985 | 0.21 | -2.2 | |
3,240,371 | - | -0.8 | |||
3,240,403 | - | -0.6 | |||
3,240,403 | - | +1.7 | |||
3,240,410 | + | -1.2 | |||
3,240,433 | + | -1.3 | |||
3,240,557 | + | +1.1 | |||
3,240,557 | + | -0.5 | |||
3,240,558 | - | +0.6 | |||
3,240,559 | + | +0.3 | |||
3,240,560 | - | +1.1 | |||
3,240,604 | + | RR42_RS14990 | 0.10 | -0.7 | |
3,240,604 | + | RR42_RS14990 | 0.10 | +0.5 | |
3,240,767 | + | RR42_RS14990 | 0.23 | -1.7 | |
3,240,767 | + | RR42_RS14990 | 0.23 | -0.5 | |
3,241,471 | + | RR42_RS14990 | 0.78 | +0.3 | |
3,241,471 | + | RR42_RS14990 | 0.78 | +1.0 | |
3,241,774 | - | -1.5 | |||
3,241,830 | + | -0.5 |
Or see this region's nucleotide sequence