Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14765 and RR42_RS14770 are separated by 67 nucleotides RR42_RS14770 and RR42_RS14775 are separated by 195 nucleotides RR42_RS14775 and RR42_RS14780 overlap by 4 nucleotides
RR42_RS14765: RR42_RS14765 - transporter, at 3,181,729 to 3,182,610
_RS14765
RR42_RS14770: RR42_RS14770 - oligoribonuclease, at 3,182,678 to 3,183,328
_RS14770
RR42_RS14775: RR42_RS14775 - peptidase M48, at 3,183,524 to 3,184,771
_RS14775
RR42_RS14780: RR42_RS14780 - GTPase RsgA, at 3,184,768 to 3,185,796
_RS14780
Position (kb)
3183
3184
3185 Strain fitness (log2 ratio)
-1
0
1
2 at 3182.547 kb on - strand at 3182.625 kb on + strand at 3183.413 kb on - strand at 3183.413 kb on - strand at 3183.413 kb on - strand at 3183.652 kb on + strand, within RR42_RS14775 at 3183.652 kb on + strand, within RR42_RS14775 at 3183.652 kb on + strand, within RR42_RS14775 at 3183.652 kb on + strand, within RR42_RS14775 at 3183.683 kb on + strand, within RR42_RS14775 at 3183.818 kb on + strand, within RR42_RS14775 at 3183.818 kb on + strand, within RR42_RS14775 at 3183.884 kb on + strand, within RR42_RS14775 at 3183.941 kb on + strand, within RR42_RS14775 at 3184.027 kb on + strand, within RR42_RS14775 at 3184.027 kb on + strand, within RR42_RS14775 at 3184.027 kb on + strand, within RR42_RS14775 at 3184.460 kb on + strand, within RR42_RS14775 at 3184.542 kb on + strand, within RR42_RS14775 at 3184.664 kb on + strand at 3184.664 kb on + strand at 3184.681 kb on + strand at 3184.715 kb on + strand at 3184.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 3,182,547 - -0.7 3,182,625 + +0.3 3,183,413 - -0.7 3,183,413 - +0.9 3,183,413 - -1.3 3,183,652 + RR42_RS14775 0.10 +0.9 3,183,652 + RR42_RS14775 0.10 +1.4 3,183,652 + RR42_RS14775 0.10 +1.7 3,183,652 + RR42_RS14775 0.10 +2.1 3,183,683 + RR42_RS14775 0.13 +1.8 3,183,818 + RR42_RS14775 0.24 +2.1 3,183,818 + RR42_RS14775 0.24 +1.8 3,183,884 + RR42_RS14775 0.29 +2.5 3,183,941 + RR42_RS14775 0.33 +2.4 3,184,027 + RR42_RS14775 0.40 +1.4 3,184,027 + RR42_RS14775 0.40 +1.8 3,184,027 + RR42_RS14775 0.40 +1.9 3,184,460 + RR42_RS14775 0.75 -0.4 3,184,542 + RR42_RS14775 0.82 +1.9 3,184,664 + +1.9 3,184,664 + +0.9 3,184,681 + +0.0 3,184,715 + +0.6 3,184,715 + -0.8
Or see this region's nucleotide sequence